Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m15
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT014638-1|AAT27262.1|  433|Drosophila melanogaster RH44447p pro...    31   1.9  
AY070492-1|AAL47963.1|  121|Drosophila melanogaster GH01562p pro...    31   1.9  
AE014297-1396|AAS65140.1|  121|Drosophila melanogaster CG6959-PB...    31   1.9  
AE014297-1395|AAF54710.1|  425|Drosophila melanogaster CG6959-PA...    31   1.9  

>BT014638-1|AAT27262.1|  433|Drosophila melanogaster RH44447p
           protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 601 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPHGRPP 720
           GH  AEP  +L    G CADA+     + +  +D PH   P
Sbjct: 319 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPHYGDP 359


>AY070492-1|AAL47963.1|  121|Drosophila melanogaster GH01562p
           protein.
          Length = 121

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 601 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPHGRPP 720
           GH  AEP  +L    G CADA+     + +  +D PH   P
Sbjct: 7   GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPHYGDP 47


>AE014297-1396|AAS65140.1|  121|Drosophila melanogaster CG6959-PB,
           isoform B protein.
          Length = 121

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 601 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPHGRPP 720
           GH  AEP  +L    G CADA+     + +  +D PH   P
Sbjct: 7   GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPHYGDP 47


>AE014297-1395|AAF54710.1|  425|Drosophila melanogaster CG6959-PA,
           isoform A protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 601 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPHGRPP 720
           GH  AEP  +L    G CADA+     + +  +D PH   P
Sbjct: 311 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPHYGDP 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,176,499
Number of Sequences: 53049
Number of extensions: 794203
Number of successful extensions: 1946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)