Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m14
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    30   0.31 
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    25   6.6  
Z81594-6|CAJ85771.1|  153|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81594-5|CAJ85770.1|  262|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81594-4|CAB04747.1|  282|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U97007-5|AAB52295.1|  564|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    25   8.7  

>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 28  IQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV----IWRQKYIGEQRH 171
           +Q   F Q + IF++Y     N G  N + I+ L V    +WR+K+ G  RH
Sbjct: 277 LQYYNFFQEYEIFLYYAIDWVNAG--NTVAIVPLTVALEPVWRRKFFGNIRH 326


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 216 TSKLTTMCWL--GWAVAMSLFSYIFLSPNH 133
           T K     WL  G+A  M+ + Y FL PN+
Sbjct: 343 TMKFWDQLWLNEGFATYMTAYGYTFLDPNY 372


>Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical
           protein F53F4.7 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 108 IKMSLVI*KLFIKYENVKVLREN 40
           I +SL+   ++  Y+N+KVLR+N
Sbjct: 14  IPLSLIFNNIYQNYKNLKVLRKN 36


>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 174 LQPNQANTLWLAWM 215
           ++P QA+ LW+AW+
Sbjct: 51  MRPKQASKLWMAWL 64


>Z81594-6|CAJ85771.1|  153|Caenorhabditis elegans Hypothetical
           protein T20F10.2c protein.
          Length = 153

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   IRXL*SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNL 114
           +  L S Q   +N  +Q   I  F ++ L N  HLNNL
Sbjct: 22  LNSLVSTQAQLINQLNQTIGIIQFEKEELKNAAHLNNL 59


>Z81594-5|CAJ85770.1|  262|Caenorhabditis elegans Hypothetical
           protein T20F10.2b protein.
          Length = 262

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   IRXL*SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNL 114
           +  L S Q   +N  +Q   I  F ++ L N  HLNNL
Sbjct: 131 LNSLVSTQAQLINQLNQTIGIIQFEKEELKNAAHLNNL 168


>Z81594-4|CAB04747.1|  282|Caenorhabditis elegans Hypothetical
           protein T20F10.2a protein.
          Length = 282

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   IRXL*SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNL 114
           +  L S Q   +N  +Q   I  F ++ L N  HLNNL
Sbjct: 151 LNSLVSTQAQLINQLNQTIGIIQFEKEELKNAAHLNNL 188


>U97007-5|AAB52295.1|  564|Caenorhabditis elegans Hypothetical
           protein ZC196.5 protein.
          Length = 564

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 277 KISKKLFHLQKPMKLKK 227
           KISKK   LQ+P+KLK+
Sbjct: 304 KISKKCDSLQEPVKLKR 320


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -2

Query: 161 SPIYFCRQITNSKIILRLLR 102
           SPI+F  +++++KI+ +LLR
Sbjct: 264 SPIFFLIRVSDNKILAKLLR 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,024,648
Number of Sequences: 27780
Number of extensions: 108182
Number of successful extensions: 334
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)