Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m14
(285 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 0.32
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 1.7
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 21 3.0
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 21 3.9
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 21 3.9
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 21 3.9
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 21 3.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 3.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 3.9
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 20 6.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 20 6.8
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 20 6.8
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 20 6.8
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 20 6.8
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 19 9.0
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 19 9.0
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 19 9.0
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 19 9.0
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 19 9.0
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 19 9.0
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 19 9.0
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 19 9.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 19 9.0
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 19 9.0
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 19 9.0
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 19 9.0
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 19 9.0
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 19 9.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 19 9.0
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 19 9.0
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 19 9.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 19 9.0
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 0.32
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 169 HCYSPTKPTHCG*LGCFRYFFLI 237
H YS T P+HC + C +F+ I
Sbjct: 184 HTYSETGPSHC--VVCQNFFYQI 204
Score = 19.4 bits (38), Expect = 9.0
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 182 QPSQHIVVSLDVSDI 226
+P +++VSL VSD+
Sbjct: 74 RPCNYLLVSLAVSDL 88
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.8 bits (44), Expect = 1.7
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 46 SQNFHIFIFYEQFLDN 93
S+N H+F+ +QF+ N
Sbjct: 553 SKNQHLFVELDQFIQN 568
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 21.0 bits (42), Expect = 3.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 47 EKTFSCIHC 21
EK FSC HC
Sbjct: 68 EKPFSCQHC 76
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 20.6 bits (41), Expect = 3.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKII 117
GLV Q +CSP F + S+++
Sbjct: 146 GLVNNTQPMCSPKLFAFDLNTSQLL 170
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 20.6 bits (41), Expect = 3.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 284 RRQNLEKIVSLTKTNEIKK 228
++QNL+K+ TNE +K
Sbjct: 82 QKQNLDKLAEWFTTNEPEK 100
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 20.6 bits (41), Expect = 3.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKIILRL 108
GL+ Q +CSP + SK++ ++
Sbjct: 145 GLINNIQLMCSPKLLAFDLNTSKLLKQI 172
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 20.6 bits (41), Expect = 3.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 284 RRQNLEKIVSLTKTNEIKK 228
++QNL+K+ TNE +K
Sbjct: 82 QKQNLDKLAEWFTTNEPEK 100
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.6 bits (41), Expect = 3.9
Identities = 4/16 (25%), Positives = 13/16 (81%)
Frame = +1
Query: 118 IILLFVIWRQKYIGEQ 165
++++ + WR +Y+G++
Sbjct: 1628 VVIVALRWRSRYLGDR 1643
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.6 bits (41), Expect = 3.9
Identities = 4/16 (25%), Positives = 13/16 (81%)
Frame = +1
Query: 118 IILLFVIWRQKYIGEQ 165
++++ + WR +Y+G++
Sbjct: 1624 VVIVALRWRSRYLGDR 1639
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 19.8 bits (39), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKII 117
GLV Q +CSP +T S+++
Sbjct: 141 GLVNNTQPMCSPKLLTFDLTTSQLL 165
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 19.8 bits (39), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Frame = -1
Query: 282 TSKSRKNCF------TYKNQ*N*KKISETSK 208
TS+ R +C +YKN+ + +K ETSK
Sbjct: 267 TSRKRYSCSREREQKSYKNENSYRKYRETSK 297
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 19.8 bits (39), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKII 117
GLV Q +CSP +T S+++
Sbjct: 141 GLVNNTQPMCSPKLLTFDLTTSQLL 165
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 19.8 bits (39), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKII 117
GLV Q +CSP +T S+++
Sbjct: 141 GLVNNTQPMCSPKLLTFDLTTSQLL 165
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 19.8 bits (39), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 186 GWAVAMSLFSYIFLSPNHK 130
G+A MS SY SPN K
Sbjct: 131 GYASPMSTSSYDPYSPNSK 149
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 19.4 bits (38), Expect = 9.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 191 GLVGL*QCLCSPIYFCRQITNSKII 117
GLV Q +CSP + SK++
Sbjct: 147 GLVNNNQPMCSPKLLTFDLKTSKLV 171
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 49 SYKNENSYRKYRETSK 64
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 271 SYKNENSYRKYRETSK 286
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 271 SYKNENSYRKYRETSK 286
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 287 SYKNENSYRKYRETSK 302
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ +K ETSK
Sbjct: 282 SYKNEREYRKYGETSK 297
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 19.4 bits (38), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 255 TYKNQ*N*KKISETSK 208
+YKN+ + +K ETSK
Sbjct: 282 SYKNENSYRKYRETSK 297
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,070
Number of Sequences: 438
Number of extensions: 1418
Number of successful extensions: 33
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5619645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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