Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m10
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    31   1.5  
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352...    30   2.0  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    30   2.7  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    29   4.6  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    29   6.1  
06_01_0598 + 4324129-4326150                                           28   8.1  

>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 258 VKHDPNIFQMSRGIQQ*HYAFHFYY*ILHPNLLRTFVRDHDLGRLVKLD 404
           V+H   + Q+    QQ H +   +  + HPN L   ++   LGRL  LD
Sbjct: 300 VQHHAGVQQLPHQFQQPHPSVPSHQMLSHPNSLSDMMQQDSLGRLQGLD 348


>01_05_0666 +
           24132641-24132768,24134854-24134860,24135042-24135230,
           24136017-24136185,24136299-24136744,24137540-24137563,
           24137736-24137828,24138806-24138884,24138979-24139063,
           24139479-24139788,24140471-24140614
          Length = 557

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
 Frame = -1

Query: 486 RIDFQNNIGLFLHENVTSIIPYDVTTISPISPDVRDHGHEQMFLINWDVIFNNKSEKRNV 307
           R+ F  N+ +   +NV   +P   +   P+    R     + F I WD    N  E+  +
Sbjct: 280 RVKFSENVTV---QNVPLDVPERPSRTGPLELAGRQADRSKWFKIPWDTRLRNADEQGTL 336

Query: 306 TAVYLVTSEKCLDHVSQIIDEKRQYEFCAKPTHGIGY-KLDHGAAFVV 166
             +  +  +     + ++I +  Q    AKP +   Y   ++G A+ +
Sbjct: 337 VYIQNLDIQFAAADIEELIRDALQLNCIAKPINHPTYDDPNNGKAYAI 384


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 614 AHQYDLTQIWLICWTCG 564
           AH+  L Q W+ CW+CG
Sbjct: 244 AHKLPLAQTWVRCWSCG 260


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 286 CHEVYSSNITLFTFIIKYYIPI 351
           CHE YS +I L+ F +  +IP+
Sbjct: 20  CHEAYSCSIALYNFALLTWIPL 41


>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
            27456774-27456872,27456948-27457012,27457476-27457575,
            27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -1

Query: 630  VAPAHCASIRSDPDLANMLDLWRIKYKTKDDRFLELKVKKSIIHW 496
            +  A+C  I   P +++ + + R+ +K  +D    +  +K  +HW
Sbjct: 1146 IVAAYCPFITDVPVISSPMFIVRLNFKVAEDNMTNICFRKEGLHW 1190


>06_01_0598 + 4324129-4326150
          Length = 673

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
 Frame = -1

Query: 585 ANMLDLWRIKYKTKDDR--FLELKVKKSIIHWQFNRIDFQNN------IGLFLHENVTSI 430
           A++LD++    K +D R  F EL+    I+ W    + +  N      + LFLH+   SI
Sbjct: 262 ASLLDMYAKCEKVEDARRVFDELEFV-DIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSI 320

Query: 429 IPYDVTTISPIS 394
           +P  VT  + IS
Sbjct: 321 VPNSVTIATVIS 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,373,525
Number of Sequences: 37544
Number of extensions: 444232
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)