Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m10
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas...    29   4.1  
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z48638-4|CAD57721.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical
           protein F43G6.3 protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 444 NVTSIIPYDVTTISPISPDVRDHGH-EQMFLINWDVIFNNKSEKRNVTAVYLVTSEKCLD 268
           N  +I+  DV   S I   +R+    E+ ++I W ++ + KSE R     YL+ +   L 
Sbjct: 89  NGVTIVGEDVPNYSRIPKSIREDAEKERQWIILWQLLSSPKSETRPRHKKYLLATSLLLS 148

Query: 267 HVSQIIDE 244
             S+I D+
Sbjct: 149 --SRIFDQ 154


>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1158

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 641  FNGQWPQLTAHQYDLTQIWLICWTCGV 561
            F GQW   +    DLTQ W+IC  CGV
Sbjct: 988  FGGQW--FSTAPLDLTQ-WIICICCGV 1011


>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
            protein R05C11.3 protein.
          Length = 1158

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 641  FNGQWPQLTAHQYDLTQIWLICWTCGV 561
            F GQW   +    DLTQ W+IC  CGV
Sbjct: 988  FGGQW--FSTAPLDLTQ-WIICICCGV 1011


>Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical
           protein M199.3 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 295 VYSSNITLFTFIIKYYIPIY*EHLFV 372
           V+++NI  FTF +KY  PI   ++FV
Sbjct: 110 VFANNIWKFTFTLKYACPITTSYVFV 135


>Z48638-4|CAD57721.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK892.1d protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 267 HVSQIIDEKRQYEFCAKPTHGIGYK--LDHGAAFVVNSKIIGFLSWGDRLGNG-TPF 106
           H +   DEK     CAKPT G  Y   ++   + V NS + G   WG+    G  PF
Sbjct: 196 HFNPRFDEKANGFMCAKPTPGKDYDPFIETNESVVRNSLVNG--EWGNEEREGKNPF 250


>AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical
           protein D1065.1 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 312 YAFHFYY*ILHPNLLRTFVRD-HDLGRLVKLD*WLL 416
           Y  +FY  +++PN++ + +   H  GR+  L  WLL
Sbjct: 100 YFTYFYLFVIYPNIINSIIYFLHRRGRIASLHRWLL 135


>Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical
           protein F35E2.7 protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 478 IYSVKLPVNYAFFYF*FEETIVFRFVFNTPQVQHISQIWVRSY 606
           + + KLP  +   Y+ F   + F F F++PQ    + ++ R +
Sbjct: 160 LLAAKLPSKFEIKYYAFIGIVSFSFFFSSPQSAAFNSVFARKW 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,633
Number of Sequences: 27780
Number of extensions: 439309
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)