Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m10
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.50 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.87 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 588 LANMLDLWRIKYKTKDDRFLELKVKKSIIHWQFNRIDFQNNIGLFLHENVTSIIPYD 418
           L+N   + ++++  KDD  +    KK   H++   + F  N G +L E    +  +D
Sbjct: 251 LSNKGSISKLQFHNKDDDLILTLGKKEFSHYEHQNV-FVKNSGQWLREYDRELEDFD 306


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 433 HYSVRCNNHQSNFT 392
           HY +R NN+QSN T
Sbjct: 10  HYCLRWNNYQSNMT 23


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = -1

Query: 669 IMCNVILLRVQWSVAPAHCASIRSDPDLANMLDLWRIKYKTKDDRFLELKVKKSIIHWQF 490
           ++C   ++  ++ +  AHC    +   LA ++       KT+ +  +   + K IIH ++
Sbjct: 186 MICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKY 245

Query: 489 NRID 478
           + I+
Sbjct: 246 DIIE 249


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 385 PRSWSRTNVLNK 350
           P  W R NVLNK
Sbjct: 180 PHGWMRRNVLNK 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,550
Number of Sequences: 438
Number of extensions: 5089
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)