Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m08
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   1.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   1.8  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   5.5  
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    23   5.5  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    23   7.3  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    22   9.6  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 160 LNNIYY*CSKSKIKLFRHVGSTIYQSVEKEGILKI 56
           L +++  C+K K+K+ RH+     QSV+ + IL+I
Sbjct: 215 LEDLFTGCTK-KMKISRHIIDASGQSVKADRILEI 248


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 123 SNCFATWVQQFISQLKRKEY*KLIVGYVYENY 28
           SN  A +V QF   + +KE+  LI G   EN+
Sbjct: 441 SNGIADFVFQFYEDVGKKEFTLLIEGIKCENF 472


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 134 ATLIINVV*NISYQTQCQVIIH 199
           ATL + V+ N  Y+T   V+ H
Sbjct: 4   ATLTVRVIRNFEYRTLKNVVFH 25


>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 112 RHVGSTIYQSVEKEGILKINCWVCL 38
           R  G +IY  ++KEGI+ +   +C+
Sbjct: 73  RAEGRSIYGKLQKEGIICVATKLCI 97


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 124 FLICYINNKCCLKYFLSNTMSGY 192
           FL        C+ YF+ N  SGY
Sbjct: 263 FLSAAAGLAACILYFIGNLTSGY 285


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 85  TDKLLNPRGETI*FLICYINN 147
           TD+ L   G+ I F ICY +N
Sbjct: 276 TDRSLFFSGQIIDFTICYTHN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,832
Number of Sequences: 5004
Number of extensions: 13599
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)