Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m08
(209 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 1.8
U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine rece... 26 3.2
AF022972-11|AAN84825.1| 370|Caenorhabditis elegans Udp-glucuron... 26 4.2
AF022972-10|AAC48233.2| 523|Caenorhabditis elegans Udp-glucuron... 26 4.2
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 25 7.3
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 25 7.3
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 25 9.7
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 25 9.7
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 25 9.7
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 25 9.7
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 25 9.7
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 25 9.7
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 25 9.7
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 25 9.7
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 25 9.7
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 147 IINVANQKSNCFATWVQQFISQLKRKEY*KLIVGYVYEN 31
++ V NQK + AT ++ + Q R+E L+ + YEN
Sbjct: 102 MLEVKNQKDDAVATLIESLLYQDARREK-NLMTHFTYEN 139
>U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 3 protein.
Length = 326
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 127 LICYINNKCCLKYFLSN--TMSGYY 195
L C++ +CC YFLS+ S YY
Sbjct: 109 LPCFVFERCCASYFLSDYEKRSRYY 133
>AF022972-11|AAN84825.1| 370|Caenorhabditis elegans
Udp-glucuronosyltransferase protein39, isoform b
protein.
Length = 370
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 182 IVFDKKYFKQHLLLM*QIKNQIVSPR 105
I+FD Y K L L Q++NQ + P+
Sbjct: 276 ILFDSSYAKNALKLAEQLENQPIKPK 301
>AF022972-10|AAC48233.2| 523|Caenorhabditis elegans
Udp-glucuronosyltransferase protein39, isoform a
protein.
Length = 523
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 182 IVFDKKYFKQHLLLM*QIKNQIVSPR 105
I+FD Y K L L Q++NQ + P+
Sbjct: 429 ILFDSSYAKNALKLAEQLENQPIKPK 454
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 3 IIIYTFIIYSFHKHTQQLIFNIPS--FST 83
II+Y+ + Y+F + Q +F+I S FST
Sbjct: 172 IILYSDVFYTFFLYVQSEVFDISSDAFST 200
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 3 IIIYTFIIYSFHKHTQQLIFNIPS--FST 83
II+Y+ + Y+F + Q +F+I S FST
Sbjct: 431 IILYSDVFYTFFLYVQSEVFDISSDAFST 459
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2730 EKEQILKNNCFIC 2742
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2709 EKEQILKNNCFIC 2721
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2765 EKEQILKNNCFIC 2777
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2719 EKEQILKNNCFIC 2731
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2719 EKEQILKNNCFIC 2731
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2730 EKEQILKNNCFIC 2742
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2719 EKEQILKNNCFIC 2731
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2709 EKEQILKNNCFIC 2721
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 79 EKEGILKINCWVC 41
EKE ILK NC++C
Sbjct: 2765 EKEQILKNNCFIC 2777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,446,175
Number of Sequences: 27780
Number of extensions: 72080
Number of successful extensions: 128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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