Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m08
(209 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 0.52
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 0.52
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 0.91
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 21 2.1
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 21 2.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 3.7
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 20 3.7
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 19 6.4
DQ435329-1|ABD92644.1| 150|Apis mellifera OBP12 protein. 19 6.4
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 19 6.4
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 19 6.4
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 19 6.4
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 19 8.5
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 0.52
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -3
Query: 144 INVANQKSNCFATWVQQFISQLKR 73
+++ +K NC +W+ +F ++ KR
Sbjct: 391 LHMQPRKKNCCRSWLSKFPTRSKR 414
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 0.52
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -3
Query: 144 INVANQKSNCFATWVQQFISQLKR 73
+++ +K NC +W+ +F ++ KR
Sbjct: 391 LHMQPRKKNCCRSWLSKFPTRSKR 414
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 0.91
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 79 EKEGILKINCWV 44
EK IL NCWV
Sbjct: 47 EKNQILTTNCWV 58
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 20.6 bits (41), Expect = 2.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 172 IRNILNNIYY*CSKSKIKLFRHVGSTIYQSVEKEGILKINCW 47
+ N + NI+ + K+ R++ S +K LKI W
Sbjct: 55 VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKW 96
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 20.6 bits (41), Expect = 2.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 172 IRNILNNIYY*CSKSKIKLFRHVGSTIYQSVEKEGILKINCW 47
+ N + NI+ + K+ R++ S +K LKI W
Sbjct: 38 VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKW 79
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.8 bits (39), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 158 KQHLLLM*QIKNQIVSPR 105
K L QIKN IVSP+
Sbjct: 205 KDKATLADQIKNGIVSPQ 222
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 19.8 bits (39), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 158 KQHLLLM*QIKNQIVSPR 105
K L QIKN IVSP+
Sbjct: 200 KDKATLADQIKNGIVSPQ 217
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 19.0 bits (37), Expect = 6.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 139 CSKSKIKLFRHVGSTIY 89
C K K+ RH+ S Y
Sbjct: 451 CRKRGEKIARHINSVSY 467
>DQ435329-1|ABD92644.1| 150|Apis mellifera OBP12 protein.
Length = 150
Score = 19.0 bits (37), Expect = 6.4
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2
Query: 199 MYNNLTLCLI 170
+YNNLT+ +I
Sbjct: 2 LYNNLTIVII 11
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 19.0 bits (37), Expect = 6.4
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2
Query: 193 NNLTLCLIRNILN 155
NN+ L L++NI++
Sbjct: 78 NNINLILLQNIID 90
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 19.0 bits (37), Expect = 6.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 139 INNKCCLKYF 168
INNK LK+F
Sbjct: 878 INNKYALKFF 887
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 19.0 bits (37), Expect = 6.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 121 KLFRHVGSTIYQSVEKEGI 65
K F ST+Y+ +EGI
Sbjct: 489 KAFGIPSSTLYKIARREGI 507
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 18.6 bits (36), Expect = 8.5
Identities = 6/23 (26%), Positives = 12/23 (52%)
Frame = -3
Query: 120 NCFATWVQQFISQLKRKEY*KLI 52
NC W+ +Q +EY +++
Sbjct: 685 NCSMDWLPGINNQTSTREYPRIM 707
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,226
Number of Sequences: 438
Number of extensions: 972
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 3039192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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