Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m07
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 0.91
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 28 0.91
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.8
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 3.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 3.7
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 3.7
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 26 3.7
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 3.7
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 6.4
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 25 6.4
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 6.4
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 8.5
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.5
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +3
Query: 75 LSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSR 221
L++D++LS +++ F+EK ++ SW + +C + + + TS +
Sbjct: 451 LTNDDLLSIQKMSLNFTEKKNELQSWSFFILFNICYNKAYSSMLTTSCK 499
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 217 EEVYMAPLRDPNVHRATKSGII---QDIILRIF 128
+E M + DPNVH T +G+ QD++ +IF
Sbjct: 186 QEAQMTTVTDPNVHCITVNGVFDDCQDLVKQIF 218
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/83 (18%), Positives = 36/83 (43%)
Frame = +3
Query: 96 SSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLI 275
++S + + ++ + ++ + + + NG YT SR A GH P +
Sbjct: 343 AASPFILALMDAKIRGLPHVLNAVILISVLTAANGITYTGSRTLHSMAEQGHAPKWFKYV 402
Query: 276 DIKRLTPVPSLIFMVSSLIISFI 344
D + P+ ++ F++ + +I
Sbjct: 403 D-REGRPLLAMAFVLCFGALGYI 424
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 13 ISMPVADLGLHANQRSPISLYCPVTKSF 96
++MP A+LG A+Q+ I + P +S+
Sbjct: 350 LNMPTAELGSSASQKYDIEAWMPARQSY 377
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 222 LFFVGARNGHLPL----AISLID-IKRLTPVPSLIFMVSSLIISFIIALNGSMNTRLIFF 386
L F+G++N L + +D I L P+ L+ + + + SF++ N LI+F
Sbjct: 315 LLFIGSKNSESKLINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNASLIYF 374
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +3
Query: 174 LCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLI 332
+C+F G + +SR+ + AR+G P + L + + T P++ ++ ++
Sbjct: 340 ICSFMMGQGCMVAASRVTYSYARDGVFPFSKYLAIVDKRTKTPNVCVWMNVVV 392
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 369 TRLIFFYFLFIDAQNKL 419
TR +FF FLFI +NKL
Sbjct: 327 TRYVFFLFLFIIERNKL 343
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 75 LSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHL 254
L+ + +S A K L M+ I+ L + L T I+TS L + +
Sbjct: 712 LNVETSMSDEAFNADKVTKGLLMLLIILFLLIILVTKNKRRRKIFTSPSLQAMVVAQDEV 771
Query: 255 PLAISLIDIK-RLTPVPSLIFMVSSL 329
P ISL DI+ + P S ++ + SL
Sbjct: 772 PEGISLADIENKENPSNSNVYSLISL 797
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 67 SLYCPVTKSFRPPP 108
SL PVTKS RPPP
Sbjct: 616 SLAFPVTKSCRPPP 629
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 358 PFSAIIKEIINELTINMSEGTGVNLLMSMSEIAKGKCPFLAPTKKSREEV 209
PFS + EL + ++ NLL S E AK K A +K+R EV
Sbjct: 176 PFSVFVVVPFAELLLPIAVKLFPNLLPSTFEDAKDKEAKKAQLRKTRNEV 225
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 201 AIYTSSRLFFVGARNGHLPLA--ISLIDIKRLTPVPSLIFMVSSLIISFIIALNGSMNTR 374
A+ SSR+ + AR+G LP + I ++ TPV ++I I+ + G++
Sbjct: 370 ALIASSRIAYSYARDGILPFSGWIGTVNPYTQTPVNAVICNCIISILILFLTFAGTVTLD 429
Query: 375 LIF 383
+F
Sbjct: 430 AVF 432
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 201 AIYTSSRLFFVGARNGHLPLA--ISLIDIK-RLTPVPSLIFMVSSLII 335
+I SSRL F AR+G LP + + +D + T + IF++S+ ++
Sbjct: 360 SIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFLISAALL 407
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 233 DEEKSRGSVYGAVEGSKCTQSHEERHYPRHHFENFLAERNSDG 105
D+EK R +++ + + T RH P H FL + SDG
Sbjct: 707 DDEKFRATIH---DDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,042
Number of Sequences: 5004
Number of extensions: 47112
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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