Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m07
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0077 + 26215954-26216224,26216355-26216579,26217099-262172... 33 0.17
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 31 0.70
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 31 0.70
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 29 2.8
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 28 5.0
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 28 5.0
04_04_0696 + 27328043-27329259,27329887-27330757 28 5.0
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646... 28 5.0
01_06_0073 + 26191822-26192116,26192227-26192445,26193655-261938... 28 5.0
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536... 28 6.6
11_01_0333 + 2490132-2491007 27 8.7
04_04_0144 - 23095172-23095830,23095915-23097265 27 8.7
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 27 8.7
>01_06_0077 +
26215954-26216224,26216355-26216579,26217099-26217247,
26217353-26217629,26217956-26218236
Length = 400
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +3
Query: 144 MSWIMPLFVALCTFGSLNGAI-YTSSRLFFVGARNG---HLPL--AISLIDIKRLTPVPS 305
M W L LCT G ++G + LF VG G +LPL +S+ I+ T PS
Sbjct: 148 MEWFRDLLGMLCTGGDMDGCKGMMNQSLFLVGEIGGNDYNLPLMSGMSIEKIRNFT--PS 205
Query: 306 LIFMVSSLIISFI 344
+I +SS+I I
Sbjct: 206 VIAKISSIITELI 218
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/68 (36%), Positives = 29/68 (42%)
Frame = -1
Query: 290 QPLDVYE*NRQR*MSVPGTDEEKSRGSVYGAVEGSKCTQSHEERHYPRHHFENFLAERNS 111
Q L++YE NR G D E S SV K S EE P H EN LA R S
Sbjct: 276 QMLELYEQNRVAPPPSQGNDTEGSSASVVNQRASGKAPGSSEEP--PTH--ENHLAPRQS 331
Query: 110 DGGGRKDF 87
G + +
Sbjct: 332 STPGHQGY 339
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 31.1 bits (67), Expect = 0.70
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +3
Query: 99 SSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLID 278
++ ++ F++ ++ +I+ SL GAI R+ AR+G LP S +D
Sbjct: 375 NTPISSAFAKYGMQWAVYIISTGAVFALIASLIGAILPQPRIVMAMARDGLLPPLFSAVD 434
Query: 279 IKRLTPVPSLIFMVSSLIISFIIAL 353
T VP+L ++S I + I+AL
Sbjct: 435 --PTTQVPTLSTILSG-ICAAILAL 456
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 108 VAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKR 287
+A F+ K LK ++ ++ + +L +Y SRL+ R+G LP + + R
Sbjct: 318 LAEAFAAKGLKFVTVLISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPTR 377
Query: 288 LTPVPSLIFM 317
TP+ S I++
Sbjct: 378 HTPLHSQIWV 387
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 143 HFENFLAERNSDGGGRKDFVTGQYSEIGXRWLAC 42
HFE F+ E N GGG++ T + E + L C
Sbjct: 497 HFEKFIEEHNITGGGKRSAKTLLFLEGFRKPLGC 530
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 143 HFENFLAERNSDGGGRKDFVTGQYSEIGXRWLAC 42
HFE F+ E N GGG++ T + E + L C
Sbjct: 452 HFEKFIEEHNITGGGKRSAKTLLFLEGFRKPLGC 485
>04_04_0696 + 27328043-27329259,27329887-27330757
Length = 695
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 176 QSHEERHYPRHHFENFLAERNSDGGGRKDF 87
Q +E+ +P E+FL+ +SD GGR F
Sbjct: 45 QQQDEKDFPADGEESFLSLDSSDEGGRSSF 74
>02_05_0391 +
28563242-28563302,28563714-28563931,28564563-28564637,
28564730-28565264,28565343-28565523,28565586-28565724,
28565826-28566067,28566157-28566322,28566591-28566698
Length = 574
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 AICISMPVADLGLHANQRSPISLYCPVTKSFRP-PPSLLR 120
+ C+ +H + S L CP T RP PP+LLR
Sbjct: 308 SFCVKCMETQCRIHVKEGSVARLTCPDTSCRRPLPPALLR 347
>01_06_0073 +
26191822-26192116,26192227-26192445,26193655-26193803,
26193910-26194186,26194683-26194963
Length = 406
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = +3
Query: 144 MSWIMPLFVALCTFGSLNGAI-YTSSRLFFVGARNGH---LPL--AISLIDIKRLTPVPS 305
M W L LC G L G + LF VG G+ LPL +S+ I+ TP S
Sbjct: 155 MKWFRDLLKLLCP-GDLAGCTGMMNQSLFLVGEIGGNDYNLPLLSGVSITKIRSFTP--S 211
Query: 306 LIFMVSSLIISFI 344
+I +SS I I
Sbjct: 212 VIAKISSTITELI 224
>05_01_0599 +
5368091-5368123,5368212-5368383,5369237-5369335,
5369636-5369748,5369824-5369916,5370081-5370244,
5370328-5370564,5370739-5370883,5370982-5371160,
5371997-5372142,5372239-5372366,5372441-5372614,
5372706-5372735,5373219-5373380,5373460-5373705,
5373733-5373870,5373974-5374174,5374304-5374448,
5374575-5374681,5374830-5374970,5375274-5375539,
5375621-5375745,5375843-5376109,5376250-5376263
Length = 1174
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 203 HIHFLATFLRRCQERTFTFGDFTHRHQEVDP 295
H H T+L + F+ G F HR+++VDP
Sbjct: 286 HTHKSITYLEELMRKIFS-GLFMHRYRDVDP 315
>11_01_0333 + 2490132-2491007
Length = 291
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 269 THRHQEVDPGAFTHIYGK 322
THR + VDP +FT I+G+
Sbjct: 32 THRKKLVDPASFTEIFGE 49
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 28 ADLGLHANQRSPISLYCPVTKSFRPPP 108
A+L LH+ + S+Y P RPPP
Sbjct: 299 AELALHSKEAMSPSVYTPRVSDARPPP 325
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 4 AICISMPVADLGLHANQRSPISLYCPVTKSFRPPP 108
A I+MP G H N +L P+ +PPP
Sbjct: 178 AAAIAMPATTSGFHKNAPDMYNLLDPMDVDVKPPP 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,278
Number of Sequences: 37544
Number of extensions: 294177
Number of successful extensions: 757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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