Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m07
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid tran... 101 4e-22
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 91 6e-19
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 83 2e-16
U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid tran... 68 6e-12
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 68 6e-12
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 68 6e-12
Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical pr... 66 1e-11
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 63 2e-10
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 63 2e-10
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 59 2e-09
AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid tr... 50 2e-06
X53314-1|CAA37396.1| 294|Caenorhabditis elegans deg-1 product p... 31 0.63
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 31 0.63
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 31 0.63
Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical pr... 31 0.83
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 30 1.1
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 29 2.5
Z79596-7|CAO78700.1| 73|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z79596-6|CAJ43438.1| 225|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z79596-5|CAB01858.3| 369|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid
transporter protein 2 protein.
Length = 483
Score = 101 bits (242), Expect = 4e-22
Identities = 51/98 (52%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSW--IMPLFVALCTFGSLNGAIYTSSRLFFV 233
AYF+VL+ DEIL S AVA+TF++KIL +MPLFV+ GSLNG + T SR+FF
Sbjct: 263 AYFSVLTVDEILDSDAVAITFADKILGTFGSKILMPLFVSFSCVGSLNGILITCSRMFFS 322
Query: 234 GARNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFII 347
GARN LP ++I I++LTP+PSLIF+ + I+ I
Sbjct: 323 GARNSQLPELFAMISIRQLTPIPSLIFLGGTSIVMLFI 360
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 91.1 bits (216), Expect = 6e-19
Identities = 43/97 (44%), Positives = 67/97 (69%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
A + +S DE+L S AVAV F+ K+ ++IMPL VA T GS NG I+TS+RLF+ GA
Sbjct: 278 ALYTAISPDEMLESPAVAVLFANKLYGKFAFIMPLCVACSTIGSANGVIFTSARLFYSGA 337
Query: 240 RNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIA 350
R G +P +++I+ K TP+P++I + +L I++++A
Sbjct: 338 REGQMPAVLTMINKKTKTPIPAVI-LTGALSIAYLLA 373
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 82.6 bits (195), Expect = 2e-16
Identities = 40/99 (40%), Positives = 64/99 (64%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
A + ++ DE+L+S AVAV F+EK ++ MP+FVA T GS NG I TSSRLF+ GA
Sbjct: 278 ALYTSITPDEMLASPAVAVLFAEKNYGWFAFCMPIFVACSTIGSANGVILTSSRLFYCGA 337
Query: 240 RNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIALN 356
R G +P +++++ TP+P++I + L + +++ N
Sbjct: 338 REGQMPNVLTMVNKTTKTPIPAVI-LTGLLSLLYLLLSN 375
>U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid
transporter protein 4 protein.
Length = 526
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
+Y VL+ +I++S+AVA F++ L S+ +P +AL G+LN I+ SR A
Sbjct: 269 SYMTVLTPGQIMNSTAVAADFAQITLGGFSYAIPFMIALLLIGTLNSNIFCGSRFTHAAA 328
Query: 240 RNGHLPLAISLIDIKRLTPVPSLIF-MVSSLIISFI 344
R GHLP +S I+ + +P +L+F +V +++++FI
Sbjct: 329 REGHLPTFLSCINEESNSPRAALLFQLVCTVVVTFI 364
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 67.7 bits (158), Expect = 6e-12
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
AYF VL + + S AVA FS + L + ++P + + GSLN +++ SR + A
Sbjct: 256 AYFVVLDVETVKQSDAVAAIFSRETLGDFANVVPFLIGILLIGSLNSNLFSGSRYMYAAA 315
Query: 240 RNGHLPLAISLIDIKRLTP-VPSLIFMVSSLIISFIIALNGSMNTRLIFFYFLF 398
R GHLP S ++ + +P V L V +L+IS+I G ++T + + F F
Sbjct: 316 RQGHLPACFSCVNTETESPRVAVLAQSVLALVISYI----GDLDTLITYVMFGF 365
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 67.7 bits (158), Expect = 6e-12
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
AYF VL + + S AVA FS + L + ++P + + GSLN +++ SR + A
Sbjct: 256 AYFVVLDVETVKQSDAVAAIFSRETLGDFANVVPFLIGILLIGSLNSNLFSGSRYMYAAA 315
Query: 240 RNGHLPLAISLIDIKRLTP-VPSLIFMVSSLIISFIIALNGSMNTRLIFFYFLF 398
R GHLP S ++ + +P V L V +L+IS+I G ++T + + F F
Sbjct: 316 RQGHLPACFSCVNTETESPRVAVLAQSVLALVISYI----GDLDTLITYVMFGF 365
>Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical
protein T11F9.4 protein.
Length = 523
Score = 66.5 bits (155), Expect = 1e-11
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
AY VLS E+++S+AVA+ F+ K L ++++P+ VA+ GSLN ++++SR +
Sbjct: 267 AYSIVLSPTEMIASNAVAIDFANKTLGAAAFVVPVMVAILLIGSLNSTMFSASRYLQAVS 326
Query: 240 RNGHLPLAISLIDIKRLTP-VPSLIFMVSSLIISFI 344
R GH+P AIS I +P V L+ ++ ++ +SF+
Sbjct: 327 RQGHIPSAISGIAPNCDSPRVALLVHILIAIAVSFL 362
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
+Y VL ++ + +SSAVA F+ L S+ +P +++ G+LN I+ SR A
Sbjct: 272 SYMTVLDTETLKNSSAVAADFARITLGDFSYAIPFMISILLIGTLNSNIFCGSRFTHAAA 331
Query: 240 RNGHLPLAISLIDIKRLTPVPSLIF-MVSSLIISFI 344
R GHLP +S I+ + +P +L+F ++ ++ ++F+
Sbjct: 332 REGHLPTFLSCINAESNSPRAALLFQLICTIAVTFV 367
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGA 239
+Y VL ++ + +SSAVA F+ L S+ +P +++ G+LN I+ SR A
Sbjct: 272 SYMTVLDTETLKNSSAVAADFARITLGDFSYAIPFMISILLIGTLNSNIFCGSRFTHAAA 331
Query: 240 RNGHLPLAISLIDIKRLTPVPSLIF-MVSSLIISFI 344
R GHLP +S I+ + +P +L+F ++ ++ ++F+
Sbjct: 332 REGHLPTFLSCINAESNSPRAALLFQLICTIAVTFV 367
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAVTFSEKIL-KMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVG 236
+YFA+L+ EI+ SSAVA TF ++ + ++ +P V G+LNG ++ SR G
Sbjct: 262 SYFAILTPQEIIDSSAVATTFIQRTVGNGPAFAVPAVVGFLLVGTLNGDVFGWSRYMVAG 321
Query: 237 ARNGHLPLAISLIDIKRLTPVPSLIF-MVSSLIISFI 344
+R +P SLI + +P S+ F ++S+I +F+
Sbjct: 322 SRRKMMPTCFSLIHVDNDSPRVSVFFHTLTSIIFAFM 358
>AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid
transporter protein 7 protein.
Length = 506
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Frame = +3
Query: 60 AYFAVLSSDEILSSSAVAV------TFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSR 221
+YF+VLS ++ +S AVAV TF+E+ L + +P ++L GS+N I+ SR
Sbjct: 263 SYFSVLSVEDFKNSPAVAVVRTFFITFAERTLGDFHYAIPFLISLLLIGSMNTTIFACSR 322
Query: 222 LFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIALNGSMNTRLIFFYF 392
+ GA+ +P + I + +P + + + ++I+ ++ G+++ + + F
Sbjct: 323 YMYSGAQQSVMPTPLRGIHHRTRSP---RLAVFAEILIAICLSFIGNLDQLISYMSF 376
>X53314-1|CAA37396.1| 294|Caenorhabditis elegans deg-1 product
protein.
Length = 294
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 137 QNDVLDNAALRGSVYIWIPQR-RHIHFLATFLRRCQERTF-TFGDFTHRHQEVDPGAFTH 310
QN ++D+ + G +P+ RH R C E+ + GDF H Q++D
Sbjct: 95 QNGLIDDCSC-GDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 153
Query: 311 IYGKFIDNLLYYCTKW 358
+ I + + C+KW
Sbjct: 154 SCEEIIHEVTFSCSKW 169
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 137 QNDVLDNAALRGSVYIWIPQR-RHIHFLATFLRRCQERTF-TFGDFTHRHQEVDPGAFTH 310
QN ++D+ + G +P+ RH R C E+ + GDF H Q++D
Sbjct: 579 QNGLIDDCSC-GDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 637
Query: 311 IYGKFIDNLLYYCTKW 358
+ I + + C+KW
Sbjct: 638 SCEEIIHEVTFSCSKW 653
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 137 QNDVLDNAALRGSVYIWIPQR-RHIHFLATFLRRCQERTF-TFGDFTHRHQEVDPGAFTH 310
QN ++D+ + G +P+ RH R C E+ + GDF H Q++D
Sbjct: 579 QNGLIDDCSC-GDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 637
Query: 311 IYGKFIDNLLYYCTKW 358
+ I + + C+KW
Sbjct: 638 SCEEIIHEVTFSCSKW 653
>Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical
protein C13C4.6 protein.
Length = 467
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 129 KILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAIS 269
K LK +++ +FV F NG IYTS+ + + G P+AI+
Sbjct: 242 KCLKDRQFLIQIFVYSINFAIANGLIYTSNAINYRGYNLKGYPIAIA 288
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/83 (22%), Positives = 42/83 (50%)
Frame = +3
Query: 135 LKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIF 314
L+++ + +PLF+ L F+ AR+ HL ++ +L+P+ ++
Sbjct: 452 LELLIFYVPLFIGLVNLKKCTFLSEFDKFYLFISARH-HLK------ELLKLSPLKNMCS 504
Query: 315 MVSSLIISFIIALNGSMNTRLIF 383
+S +I+SF++ L + T ++F
Sbjct: 505 SLSIIIVSFVVELPFLLITSMVF 527
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 150 WIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTP-VPSLIFMVSS 326
W++ + L TFG+ + ++ RL A++ +PL L K++T + ++ +
Sbjct: 414 WVLLIGSFLSTFGAALQCLCSAPRLLQAIAKDEVIPL---LSPFKKVTANNEPFLGLILT 470
Query: 327 LIISFIIALNGSMNT--RLIFFYFL 395
II+ I L GSM+T ++ F+FL
Sbjct: 471 TIIAEIAILMGSMDTIAAVVDFFFL 495
>Z79596-7|CAO78700.1| 73|Caenorhabditis elegans Hypothetical
protein C02C6.3c protein.
Length = 73
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 213 SSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIA 350
+S +VGAR +PL D T + S F S+II+FI++
Sbjct: 24 ASPKMYVGARIAEVPLNKLTCDEPLFTSMSSFKFNFYSMIIAFIVS 69
>Z79596-6|CAJ43438.1| 225|Caenorhabditis elegans Hypothetical
protein C02C6.3b protein.
Length = 225
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 213 SSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIA 350
+S +VGAR +PL D T + S F S+II+FI++
Sbjct: 176 ASPKMYVGARIAEVPLNKLTCDEPLFTSMSSFKFNFYSMIIAFIVS 221
>Z79596-5|CAB01858.3| 369|Caenorhabditis elegans Hypothetical
protein C02C6.3a protein.
Length = 369
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 213 SSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLIISFIIA 350
+S +VGAR +PL D T + S F S+II+FI++
Sbjct: 320 ASPKMYVGARIAEVPLNKLTCDEPLFTSMSSFKFNFYSMIIAFIVS 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,834
Number of Sequences: 27780
Number of extensions: 265365
Number of successful extensions: 877
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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