Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m06
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    30   0.16 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.1  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   2.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   7.8  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 252 KQLDIEKGVRFTDEQF----ALMKYETNDVKTLKNLTTVDELYALAD 124
           +Q+  EK + F D  F      + YE+ND+++++N    DE   LAD
Sbjct: 156 EQMSFEKVIPFNDASFFHPHCWVDYESNDIESVQNCWLGDENLLLAD 202


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 285 LAKCREEIEEQKQLDIEKGVRFTDEQFALMKYETND------VKTLKNLTTVDELYALAD 124
           LAKC E  EE+    +++G++   ++F L+K    D      V    N+ T  E Y + D
Sbjct: 191 LAKCEEYFEERSLASLQRGLK---DEFVLVKIYATDKNFEQKVVAEFNVATNVEGYFIID 247

Query: 123 KII 115
           ++I
Sbjct: 248 EVI 250


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   FYHLKCSRCSTLSHNKRKVYQ 65
           FY L   +C TL HN +K +Q
Sbjct: 617 FYGLVALKCCTLQHNLKKSFQ 637


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 216 DEQFALMKYETNDVKTLKNLTTVDELYALADKII 115
           D +F  +      V TLK  T  DEL ALA ++I
Sbjct: 384 DMRFHKLSEVRQHVNTLKEATKDDELAALASRVI 417


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 449 SGEWLTGKLQEHQKNVPMP 393
           S EW +G+   H  N P+P
Sbjct: 459 SAEWASGETTGHSSNSPLP 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,152
Number of Sequences: 5004
Number of extensions: 28597
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)