Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m06
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455...    31   0.37 
12_02_0879 + 23960084-23961551,23961796-23962184                       27   7.9  

>04_04_0862 +
           28843654-28844386,28844486-28844895,28844995-28845560,
           28845737-28845803
          Length = 591

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 328 LAGIFLIHRLI--EFLGSFQFPVIGIGTFF*CSCNFPVNHSPEH 453
           +AG+ +I R+I  E   +F +P   + T    +  FPVN  P H
Sbjct: 459 VAGVSVIERVIRSEAFANFTYPYFSVETLLNMTAGFPVNLRPRH 502


>12_02_0879 + 23960084-23961551,23961796-23962184
          Length = 618

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 418 SCNFPVNHSPE-HKYWVVEK 474
           SC F  +HSPE  KYW V +
Sbjct: 63  SCKFGAHHSPEPKKYWPVRR 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,108,107
Number of Sequences: 37544
Number of extensions: 158341
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)