Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m06
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001367-1|AAN71122.1|  209|Drosophila melanogaster AT30670p pro...    38   0.005
AY094997-1|AAM11325.1|  441|Drosophila melanogaster AT11889p pro...    38   0.005
AE014134-1335|AAN10645.1|  209|Drosophila melanogaster CG7196-PB...    38   0.005
AE014134-1333|AAF52552.2|  441|Drosophila melanogaster CG7196-PA...    38   0.005
AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA...    31   0.82 
AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-P...    31   1.1  
AY061243-1|AAL28791.1|  249|Drosophila melanogaster LD18367p pro...    28   7.6  
AE014297-1008|AAO41529.1|  249|Drosophila melanogaster CG32939-P...    28   7.6  
AE014297-1002|AAG22138.1|  249|Drosophila melanogaster CG18542-P...    28   7.6  

>BT001367-1|AAN71122.1|  209|Drosophila melanogaster AT30670p
           protein.
          Length = 209

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = -3

Query: 270 EEIEEQKQLDIEKGVRFTDEQFALMKYETNDVKTLKNLTTVDELYALADKII 115
           EE+E + + +  +G+  + +Q+  +++E   +  L+N   + ELY LA++II
Sbjct: 121 EELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLAEEII 172


>AY094997-1|AAM11325.1|  441|Drosophila melanogaster AT11889p
           protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = -3

Query: 270 EEIEEQKQLDIEKGVRFTDEQFALMKYETNDVKTLKNLTTVDELYALADKII 115
           EE+E + + +  +G+  + +Q+  +++E   +  L+N   + ELY LA++II
Sbjct: 353 EELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLAEEII 404


>AE014134-1335|AAN10645.1|  209|Drosophila melanogaster CG7196-PB,
           isoform B protein.
          Length = 209

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = -3

Query: 270 EEIEEQKQLDIEKGVRFTDEQFALMKYETNDVKTLKNLTTVDELYALADKII 115
           EE+E + + +  +G+  + +Q+  +++E   +  L+N   + ELY LA++II
Sbjct: 121 EELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLAEEII 172


>AE014134-1333|AAF52552.2|  441|Drosophila melanogaster CG7196-PA,
           isoform A protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = -3

Query: 270 EEIEEQKQLDIEKGVRFTDEQFALMKYETNDVKTLKNLTTVDELYALADKII 115
           EE+E + + +  +G+  + +Q+  +++E   +  L+N   + ELY LA++II
Sbjct: 353 EELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLAEEII 404


>AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA
           protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 279 KCREEIEEQKQLDIEKGVRFTDEQF-ALMKYETNDVKTLKNLTTVDELYA 133
           + R+E EE ++ ++EK +    +Q   L K    D+K LK+L + +EL A
Sbjct: 595 RVRQEKEESERKELEKKLEAEQKQMEVLKKLREEDLKCLKSLQSKEELEA 644


>AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-PA
           protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 434 TGKLQEHQKNVPMPITGN*KLPRNSINRWMRKMPARKLKRNVN 306
           TGKL   Q NVP+P+     LP+     W+ +   R+   N++
Sbjct: 737 TGKLHVFQPNVPLPLYQRSNLPKTHGLAWLPRRQPRQSSINID 779


>AY061243-1|AAL28791.1|  249|Drosophila melanogaster LD18367p
           protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  VYQCYKSFLFKCDFKDVSIQ*FCQ 128
           V +CY+ F+F+C  K+ S Q F +
Sbjct: 101 VAECYEPFIFRCSPKEASYQIFTE 124


>AE014297-1008|AAO41529.1|  249|Drosophila melanogaster CG32939-PA
           protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  VYQCYKSFLFKCDFKDVSIQ*FCQ 128
           V +CY+ F+F+C  K+ S Q F +
Sbjct: 101 VAECYEPFIFRCSPKEASYQIFTE 124


>AE014297-1002|AAG22138.1|  249|Drosophila melanogaster CG18542-PA
           protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  VYQCYKSFLFKCDFKDVSIQ*FCQ 128
           V +CY+ F+F+C  K+ S Q F +
Sbjct: 101 VAECYEPFIFRCSPKEASYQIFTE 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,210
Number of Sequences: 53049
Number of extensions: 286788
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)