Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m06
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical
           protein T01G5.2 protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 95  FQRRFDPIILSANA*SSSTVVKFFNVLTSLVSYFMSANCSSVN 223
           FQ+ F  I       SS  V   FNV+  L+ YF+ +  S  N
Sbjct: 492 FQKSFIDIYTLIIVVSSIFVALIFNVIAKLIQYFIKSKSSEKN 534


>U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical
           protein F41D9.1 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 304 LFTFLFSFLAGIFLIHRLIEFLGSFQFPV 390
           +FT L    A +  + ++IE++GSF+F +
Sbjct: 373 IFTALSQLPASVTEVEKVIEYMGSFEFTI 401


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 195 KYETNDVKTLKNLTTVDELYALADKIIGSKRL 100
           K     +   K++ TVD++Y LADK +   +L
Sbjct: 417 KQRLQSLARTKHIATVDQVYVLADKYVMRDKL 448


>Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.7 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 307 FTFLFSFLAGIFLIHRLIEFLG--SFQFPVIGIGTFF*CSCNFPV 435
           F F+F +  G+FL+  + E +G   + F V+ + T    + +FP+
Sbjct: 246 FIFMFIYSFGVFLLGTIREIIGYEQYYFWVVWVYTIPFIAASFPI 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,999
Number of Sequences: 27780
Number of extensions: 160732
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)