Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m05
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 312 3e-86
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 253 2e-68
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 30 0.44
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 27 4.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 4.1
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 5.4
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 26 7.2
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 9.5
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 9.5
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 312 bits (767), Expect = 3e-86
Identities = 143/241 (59%), Positives = 185/241 (76%)
Frame = -1
Query: 799 AQGKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKK 620
+QG+G GRQ ++ ARTADL+LM+LDATK R+ +E ELE VGIRLN+ PN+ +KK
Sbjct: 124 SQGRG-GRQAVSAARTADLILMVLDATKAADQREKIEYELEQVGIRLNRQPPNVTLTIKK 182
Query: 619 GGGLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLY 440
GG+ FN T LT +D KM ILHEY+I NA++L RED T D+ ID+++ NR Y+ CLY
Sbjct: 183 NGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCLY 242
Query: 439 VYNKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDF 260
Y+KID +S++EVDR+AR P SVV+SCNMKLNLD+L E +WE L+L R+YTK+ G+ PDF
Sbjct: 243 CYSKIDAVSLEEVDRLARLPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDF 302
Query: 259 DDGLILRKGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQLIK 80
+ LI+RKG T+E VC+ IHRTLA QLKYALVWGTS K+SPQ VG+NH V + DVV ++
Sbjct: 303 SEALIVRKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVVGLNHRVEEGDVVTIVT 362
Query: 79 K 77
K
Sbjct: 363 K 363
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 253 bits (619), Expect = 2e-68
Identities = 118/240 (49%), Positives = 169/240 (70%), Gaps = 1/240 (0%)
Frame = -1
Query: 793 GKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKKGG 614
G+GRG+QVI VART +L+ ++LD KP H++++E+ELE GIRLNK PNI FK K+ G
Sbjct: 127 GRGRGKQVITVARTCNLIFIVLDVLKPMSHKRIIEEELEGFGIRLNKEPPNIVFKKKERG 186
Query: 613 GLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVY 434
G++ +T LT ID ++ + EY++ +A++ FR D T D+LIDV+ NRVY+P LYV
Sbjct: 187 GINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDDLIDVLEGNRVYIPALYVL 246
Query: 433 NKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDFDD 254
NKID ISI+E+D I R P++V + N N+D L E +W+YL+L+RVYT+ G PD+ +
Sbjct: 247 NKIDSISIEELDLIDRIPNAVPICGNRGWNIDELKETMWDYLNLVRVYTRPRGLEPDYSE 306
Query: 253 GLILRKG-VTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQLIKK 77
+ILR G TVE C++IH ++ +Q K+A VWG S Y RVG++H + DEDVV ++KK
Sbjct: 307 PVILRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = -1
Query: 247 ILRKGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQLIKK 77
+L+K + HSI ++ +++ A VW +S P V I + +N E +QL++K
Sbjct: 166 VLKKTTDHPILIHSIDQS--SEILGAAVWTSSNSKRPVYVSIGNQMNLEQSIQLVQK 220
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 358 NMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDFDD 254
NM+ N+DY E++ +Y + + PPD D+
Sbjct: 172 NMQYNVDYNSELIQQYAGSVSCHVLDWMNPPDDDN 206
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 228 PWSTSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTT 115
P STS+T + P + +T +P+PST S + ST+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTS 344
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -1
Query: 604 FNSTCQLTKIDEKMVQMI--LHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVYN 431
FN L + EK +++ E+KI NA+ R T L+ + +NR V+N
Sbjct: 556 FNQIANLLENKEKSRELLEAWQEWKILNAKDDTRIGTTNSNLLRLKRSNRTAAQTASVWN 615
Query: 430 KIDQISIQEVDRIARQPHSV 371
+I++ + + ++ S+
Sbjct: 616 RIERAAAHDGPSLSAPSSSI 635
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 156 PVPSTLRSVSASTTPSTMKMSSNLSRNN 73
PVPS++ S + PST + SNL N+
Sbjct: 304 PVPSSMGSEATLNMPSTYGIDSNLYTNS 331
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 466 NRVYLPCLYVYNKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYL 332
N + P L ++ D + EV R A PH+ VS +LD+L
Sbjct: 364 NNIKCPMLILWGGKDTLINMEVMRTALPPHAKEVSIAHYEHLDFL 408
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 713 WFCSIQHH*YQVCSTCYGYNLSSSTF 790
W+ ++++ Y +C CY SS+F
Sbjct: 204 WYHNLKNKKYDICPNCYKQGRFSSSF 229
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 VDGVADVLHGHTLSQDKSIIKIWGLSRLFGIYP-DKRQIFP 319
+DG D LHG +L +K K + + + P D +++P
Sbjct: 327 IDGTVDYLHGKSLFPEKRNFKELTMRKRSIVTPEDSEEVYP 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,927
Number of Sequences: 5004
Number of extensions: 68984
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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