Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m05
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 264 7e-71
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 211 6e-55
05_03_0672 + 16835442-16835501,16835620-16835733,16835818-168359... 111 5e-25
01_01_0139 + 1263356-1264273 34 0.11
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 32 0.61
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 29 3.2
03_06_0227 - 32500603-32500621,32502346-32502602 29 4.3
09_02_0383 - 8259156-8261843 28 7.5
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 28 7.5
06_02_0196 - 12898050-12898553,12898689-12900824 28 9.9
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 28 9.9
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 264 bits (646), Expect = 7e-71
Identities = 129/253 (50%), Positives = 178/253 (70%), Gaps = 14/253 (5%)
Frame = -1
Query: 793 GKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKKGG 614
GKGRGRQVI+ ART +++L++LDA KP H++L+EKELE GIRLNK PN+ F+ K G
Sbjct: 139 GKGRGRQVISTARTCNVILIVLDAIKPITHKRLIEKELEGFGIRLNKTPPNLTFRRKDKG 198
Query: 613 GLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVY 434
G++F ST T +D + V+ I EY+I NA+V R D T D+LIDVI +R+Y+PC+YV
Sbjct: 199 GINFTSTVTNTNLDLETVKAICSEYRIHNADVSLRYDATADDLIDVIEGSRIYMPCIYVV 258
Query: 433 NKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDFDD 254
NKIDQI+++E++ + + PH +S +++ NLD LLE++WEYL L+R+YTK G PD++D
Sbjct: 259 NKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEMIWEYLDLVRIYTKPKGLNPDYED 318
Query: 253 GLIL-RKGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVG------IN-------H 116
+I+ K TVE C+ IH+ + Q KYALVWG+S K+ PQRVG IN H
Sbjct: 319 PVIVSSKKKTVEDFCNRIHKDMVKQFKYALVWGSSVKHKPQRVGKGISPNINLGGFVQEH 378
Query: 115 TVNDEDVVQLIKK 77
+ DEDVVQ+IKK
Sbjct: 379 ELEDEDVVQIIKK 391
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 211 bits (515), Expect = 6e-55
Identities = 97/150 (64%), Positives = 123/150 (82%)
Frame = -1
Query: 799 AQGKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKK 620
++GKGRGRQVIAVA+++DLVLM+LDA+K HRQ+L +ELE+VG+RLNK P IYFK KK
Sbjct: 124 SEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKKKK 183
Query: 619 GGGLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLY 440
GG+SFNS LT +DEK+ ILHEYKI NAEVLFRED T D+ IDVI NR Y+ C+Y
Sbjct: 184 TGGISFNSMIPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVIEGNRKYIKCVY 243
Query: 439 VYNKIDQISIQEVDRIARQPHSVVVSCNMK 350
VYNKID + I +VD++ARQP+S+V+SCN++
Sbjct: 244 VYNKIDVVGIDDVDKLARQPNSLVISCNLQ 273
>05_03_0672 +
16835442-16835501,16835620-16835733,16835818-16835988,
16836090-16836185
Length = 146
Score = 111 bits (268), Expect = 5e-25
Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Frame = -1
Query: 349 LNLDYLLEILWEYLSLIRVYTKKPGQPPDFDDGLIL---RKGVTVEHVCHSIHRTLAAQL 179
LNLD LL +WE + L+RVYTK GQ PDF D ++L R G TVE C+ IHR+L +
Sbjct: 21 LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTDPVVLSTDRGGCTVEDFCNHIHRSLVKDV 80
Query: 178 KYALVWGTSTKYSPQRVGINHTVNDEDVVQLIKK 77
KY LVWGTS ++ PQ G+ H + DEDVVQ++KK
Sbjct: 81 KYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 114
>01_01_0139 + 1263356-1264273
Length = 305
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 222 STSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTTPST 106
S S+TP+ PW PS AP T ++ TTPST
Sbjct: 96 SASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPST 134
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 376 NAVVSLSCRLPGWRSDLSCCRRRGRAG 456
+A+ L+C LP W S S +RRGRAG
Sbjct: 1528 DALNKLACLLPSWISKASAHQRRGRAG 1554
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 376 NAVVSLSCRLPGWRSDLSCCRRRGRAG 456
+A+ + C LP W S S +RRGRAG
Sbjct: 633 DALNNTPCLLPSWISKASARQRRGRAG 659
>03_06_0227 - 32500603-32500621,32502346-32502602
Length = 91
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 155 GAPHQRVFQLGGQGPVDGVADVLHGHTLS 241
G P +R+ + GG GP D A LHG L+
Sbjct: 52 GRPSRRIHRRGGLGPSDLAASDLHGDGLT 80
>09_02_0383 - 8259156-8261843
Length = 895
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -1
Query: 538 KIFNAEVLFREDCTPDELIDVILANRVYLPCLYVYNKIDQISIQ-EVDRIARQPHSVVVS 362
K+ N E L D +L+ + A+R P N ++++ ++ +D + +
Sbjct: 196 KLINNEFLGTVDGLHFDLVICVTASRSCRPENLQINLLEKLGLELRMDTGRESRRAAIFD 255
Query: 361 CNMKLNLDYLLEILWEYLSLIRVYTKKPGQ 272
N LL+ LWE +SL + PG+
Sbjct: 256 YLWNKNFLLLLDDLWEKISLEEIGVPPPGR 285
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 491 RAHRCYTREQSVPALPLRLQQDRSDLHPG 405
R+ YT + + LPLRL +D L+PG
Sbjct: 459 RSTSVYTLRRKISMLPLRLSEDLVSLNPG 487
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 392 YPVDFLDGDLIYLVVDVEAGQVHSVREYNIYELVRCAVFTEQNLSI 529
Y + ++ L+ LV EAG VH V+ ++I ++ + EQN I
Sbjct: 476 YLTELVNRCLLLLVKRNEAGHVHEVQMHDILRVLALSKAHEQNFCI 521
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 150 PSTLRSVSASTTPSTMKMSSNLS 82
P+ +SAST+PSTM MSS+ S
Sbjct: 50 PTVTTPMSASTSPSTMPMSSSPS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,931,029
Number of Sequences: 37544
Number of extensions: 469338
Number of successful extensions: 1344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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