Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m05
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 365 e-101
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 269 1e-72
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 269 1e-72
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 31 0.72
Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF016445-3|AAC69063.2| 372|Caenorhabditis elegans Serpentine re... 29 2.9
Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL021571-7|CAA16515.1| 516|Caenorhabditis elegans Hypothetical ... 29 3.9
Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical pr... 29 5.1
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 29 5.1
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 28 8.9
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 28 8.9
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 365 bits (898), Expect = e-101
Identities = 162/243 (66%), Positives = 204/243 (83%), Gaps = 2/243 (0%)
Frame = -1
Query: 799 AQGKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKK 620
+QGKGRGRQVI+VA+TADL+LMMLDA K + LLE+ELE+VGIRLNK PNIY K KK
Sbjct: 124 SQGKGRGRQVISVAKTADLILMMLDAGKSDQQKMLLERELEAVGIRLNKKPPNIYVKQKK 183
Query: 619 GGGLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLY 440
GG+ F +T LT +EK++ +LHEYKIFNA+V+FREDCT DE IDVI NRVY+ CLY
Sbjct: 184 VGGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFIDVIQGNRVYMTCLY 243
Query: 439 VYNKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDF 260
VYNK+DQISI+E+DR+AR PH VV+SC M LN+DYLLE +WEYL+L+RVYTKKPG PD
Sbjct: 244 VYNKVDQISIEEIDRLARMPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTKKPGNAPDL 303
Query: 259 --DDGLILRKGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQL 86
+DG+ILR G T+EH CH++HR++AAQL+YA+VWGTSTK+SPQRVG++H ++ EDV+Q+
Sbjct: 304 GPEDGIILRGGATIEHCCHALHRSIAAQLRYAIVWGTSTKFSPQRVGLHHKLDHEDVIQI 363
Query: 85 IKK 77
+KK
Sbjct: 364 VKK 366
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 269 bits (660), Expect = 1e-72
Identities = 129/240 (53%), Positives = 173/240 (72%), Gaps = 1/240 (0%)
Frame = -1
Query: 793 GKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKKGG 614
GKGRG+QVIAVART L+LM+LD KP H++LLE ELE GIRLNK PNI +K K+ G
Sbjct: 126 GKGRGKQVIAVARTCSLILMVLDVMKPLQHKKLLEYELEGFGIRLNKQPPNIGYKRKEKG 185
Query: 613 GLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVY 434
G++ +++D +V+ IL EY+I NA++ R D T ++LIDVI NR+Y+PC+YV
Sbjct: 186 GINLTMLVPQSELDLDLVKSILAEYRIHNADITLRYDATSEDLIDVIEGNRIYIPCIYVL 245
Query: 433 NKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDFDD 254
NKIDQISI+E+D I R PH+V +S + K N D LLE +WEYL+LIR+YTK GQ PD+
Sbjct: 246 NKIDQISIEELDIIYRIPHTVPISAHHKWNFDDLLEKVWEYLNLIRIYTKPKGQLPDYSQ 305
Query: 253 GLILR-KGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQLIKK 77
++L + ++E +C IH++L K ALVWG S K++PQRVG +H + DEDVVQ+IKK
Sbjct: 306 PIVLNAERKSIEDLCTKIHKSLQKDFKCALVWGASAKHNPQRVGRDHVLIDEDVVQVIKK 365
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 269 bits (660), Expect = 1e-72
Identities = 129/240 (53%), Positives = 173/240 (72%), Gaps = 1/240 (0%)
Frame = -1
Query: 793 GKGRGRQVIAVARTADLVLMMLDATKPYVHRQLLEKELESVGIRLNKPKPNIYFKVKKGG 614
GKGRG+QVIAVART L+LM+LD KP H++LLE ELE GIRLNK PNI +K K+ G
Sbjct: 126 GKGRGKQVIAVARTCSLILMVLDVMKPLQHKKLLEYELEGFGIRLNKQPPNIGYKRKEKG 185
Query: 613 GLSFNSTCQLTKIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVY 434
G++ +++D +V+ IL EY+I NA++ R D T ++LIDVI NR+Y+PC+YV
Sbjct: 186 GINLTMLVPQSELDLDLVKSILAEYRIHNADITLRYDATSEDLIDVIEGNRIYIPCIYVL 245
Query: 433 NKIDQISIQEVDRIARQPHSVVVSCNMKLNLDYLLEILWEYLSLIRVYTKKPGQPPDFDD 254
NKIDQISI+E+D I R PH+V +S + K N D LLE +WEYL+LIR+YTK GQ PD+
Sbjct: 246 NKIDQISIEELDIIYRIPHTVPISAHHKWNFDDLLEKVWEYLNLIRIYTKPKGQLPDYSQ 305
Query: 253 GLILR-KGVTVEHVCHSIHRTLAAQLKYALVWGTSTKYSPQRVGINHTVNDEDVVQLIKK 77
++L + ++E +C IH++L K ALVWG S K++PQRVG +H + DEDVVQ+IKK
Sbjct: 306 PIVLNAERKSIEDLCTKIHKSLQKDFKCALVWGASAKHNPQRVGRDHVLIDEDVVQVIKK 365
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 225 WSTSATPSTGPWPPS*NTRWCGAP-VPSTLRSV-SASTTPSTMK 100
W+T TPST P+ T P P+T++S + TTP+TMK
Sbjct: 149 WATKPTPSTMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMK 192
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 222 STSATPSTGPWPPS*NTRWCGAPV-PSTLRSVSASTTPSTMKMSS 91
+T TP+T P+ T P PST++S + TTP+TMK SS
Sbjct: 411 TTPTTPTTMKSTPTTPTTMKSTPTTPSTMKS--SPTTPTTMKTSS 453
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 225 WSTSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTTPSTMK 100
W T + S ++RW P PST++ S TTP+T+K
Sbjct: 130 WETLDDNGKNYFVCSYDSRWATKPTPSTMK--STPTTPTTIK 169
>Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical
protein W04A8.1 protein.
Length = 667
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 141 LRSVSASTTPSTMKMSSNLSRNNLTRVVLFTHDPINFMLTTIL 13
+ VSA TMK S NL N+ V+ FT PI L TI+
Sbjct: 467 ISDVSAFLQRKTMKKSRNLGENSKNEVI-FTGSPIEKKLKTIV 508
>AF016445-3|AAC69063.2| 372|Caenorhabditis elegans Serpentine
receptor, class w protein133 protein.
Length = 372
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 513 NRTSALNILYSCKIICTIFS-SILVS*QVELNDKPPPFFTLK*ILGLG 653
N ++AL +++ IIC IFS + + ++E+ D+ P K ++ G
Sbjct: 156 NSSTALRVIFGVSIICIIFSINTALENEIEIIDRKPSECNSKGVISYG 203
>Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 334 LLEILWEYLSLIRVYTKKPGQPPDFDDGLILRKGVTVEHVCHSIHRT--LAAQLKYALVW 161
++ I+W + S I + T + QP +DD L G + H+ HS+ L A + L W
Sbjct: 180 VMTIIWIFSSSILLTTVRWEQPECYDDSLCF-VGNEIRHLAHSVVFAFFLPASVTLTLYW 238
>AL021571-7|CAA16515.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 334 LLEILWEYLSLIRVYTKKPGQPPDFDDGLILRKGVTVEHVCHSIHRT--LAAQLKYALVW 161
++ I+W + S I + T + QP +DD L G + H+ HS+ L A + L W
Sbjct: 180 VMTIIWIFSSSILLTTVRWEQPECYDDSLCF-VGNEIRHLAHSVVFAFFLPASVTLTLYW 238
>Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical
protein R11A8.3 protein.
Length = 506
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +2
Query: 26 NMKLIGSWVNNTTRVRLFLDKLDDIFIVDGVVDADTLRRVLGTGAPHQRVFQLGGQGPVD 205
N KL + +V + L ++DD +++ D LR+ +G H R GP +
Sbjct: 38 NTKLAQLLATSGHQVTVLLAQVDDALLIENATDFAVLRKKVGVPRGHLRQVLWSNPGPYE 97
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -2
Query: 219 TSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTTPSTMKMSSNLSRNNLTRVVLFTHDP 40
T+ +P T P S +T +P P+ + S TT S S N+ T++ L
Sbjct: 267 TATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTASQNV--ETTTKLGLTASIT 324
Query: 39 INFMLTTILNLI 4
++ M TT+L+ I
Sbjct: 325 VSIM-TTLLHKI 335
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 228 PWSTSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTTPST 106
P +T+ PST P S T P P+T S S STT +T
Sbjct: 597 PSTTTTVPSTTP--TSTTTTTTTTPKPTTSTSTSTSTTTTT 635
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 228 PWSTSATPSTGPWPPS*NTRWCGAPVPSTLRSVSASTTPST 106
P +T+ PST P S T P P+T S S STT +T
Sbjct: 597 PSTTTTVPSTTP--TSTTTTTTTTPKPTTSTSTSTSTTTTT 635
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,819
Number of Sequences: 27780
Number of extensions: 395039
Number of successful extensions: 1169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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