Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m05
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 41  GSWVNNTTRVRLFLDK 88
           GSWV++   V +FLDK
Sbjct: 188 GSWVHSGEEVNIFLDK 203


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 385 QPHSVVVSCNMKLNLDYLLEILWE-YLSLIRVYTKKPGQPPDFDDGLILRKGV 230
           +P S+  + ++ + LD  ++ L     ++IR   + PGQ PD+     +++GV
Sbjct: 548 RPISISKNQHLFVELDQFIQNLHAGENTIIRNSQQAPGQSPDWPSTSQIQRGV 600


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 462 LFASITSMSSSGVQSSRNRTSALNILYSCKIICTIFSS 575
           ++  IT    + + S RN T++L ++Y  K I   F S
Sbjct: 8   MYLGITCQGVTDIHS-RNLTNSLKVIYEWKYIDYDFGS 44


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 580 KIDEKMVQMILHEYKIFNAEVLFREDCTPDELIDVILANRVYLPCLYVYNKIDQI 416
           KI   +V+ +L++ +   A+ L  E C+P    + ++     L C + Y  I+QI
Sbjct: 82  KISSDIVRAVLNDNE---ADQLLAE-CSPISDPNALIKISKILECFFKYKTINQI 132


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 163 WGTSTKYSPQRVGINHTVN 107
           W T  +Y PQ +G+  T N
Sbjct: 460 WDTRKEYIPQNLGVIGTSN 478


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 535 IFNAEVLFREDCTPDELI 482
           ++  E+ F E C P+E++
Sbjct: 425 VYVREIAFSESCLPEEIL 442


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 144 YLVLVPHTSAYFSWAAR 194
           Y +L PH +AYF   AR
Sbjct: 758 YNILPPHVAAYFLSRAR 774


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 458 HSVREYNIYELVRCAVFTEQNLSIKY 535
           HS R  +   ++    +TE NL+IKY
Sbjct: 278 HSNRTNSDPRMILTEAYTEFNLTIKY 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,513
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)