Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m04
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    22   1.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    24   2.4  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   3.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    23   7.4  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    23   7.4  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    22   9.8  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    22   9.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    22   9.8  

>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)
 Frame = -1

Query: 175 LPGW-----GLWWCH 146
           LP W     G WWCH
Sbjct: 215 LPDWIPFHPGKWWCH 229



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 184 SIGLPGWGLWW 152
           +IG P WG +W
Sbjct: 183 AIGCPHWGKFW 193


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 115 SVYNDCLENNYDTTT 159
           S+Y+  L NNYD+TT
Sbjct: 311 SLYSQRLSNNYDSTT 325


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 30  LPSHSLHKDYQLSLISL-WY 86
           L +H + KD QLS+ISL W+
Sbjct: 365 LHAHFVSKDIQLSIISLPWF 384


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  LQLXGIASKPFTS*GLPAKPHIPLVQRTTP 100
           L L  +  +PF+     A P + +V+RT+P
Sbjct: 237 LTLINLPEQPFSISSPTATPQLGVVKRTSP 266


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 124 NDCLENNYDTTTVPNPAIQLKL 189
           N C+E+ ++ T VPN   Q +L
Sbjct: 181 NACVEHEFEITIVPNVQQQPEL 202


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 91  HDSIYQ*ASVYNDCLENNYDTTTVPNPAIQ 180
           H+S+      Y   + ++Y  TT+ NP  Q
Sbjct: 366 HESVEMHRGDYLSIVTSHYPFTTIQNPGYQ 395


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  SIYQ*ASVYNDCLENNYDTTTVPNPAIQLKL 189
           SI +   + N C+E NY + T+   A+  +L
Sbjct: 141 SILELPELMNACIERNYFSETLEFQALAYRL 171


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 124 NDCLENNYDTTTVPNPAIQL 183
           ND   NN   T  P PA  L
Sbjct: 367 NDAFNNNNPATATPPPACSL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,717
Number of Sequences: 5004
Number of extensions: 11164
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)