Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m04
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438...    25   6.4  

>05_06_0244 +
           26643193-26643306,26643398-26643493,26643819-26643884,
           26643965-26644024,26644108-26644164,26644464-26644593,
           26645114-26645181,26645276-26645368,26645473-26645520,
           26645882-26646019,26646738-26646833,26647979-26648050,
           26648928-26648982,26649078-26649112,26649808-26649963
          Length = 427

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 4   FTTSIXRDSFQAIHFIRITS*ASYPSGTTHDSIY 105
           FT+S   D+ Q  H++R+ + A  P+G  H + Y
Sbjct: 78  FTSSARTDNLQLYHWVRVVNGAP-PTGDYHFAKY 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,010,181
Number of Sequences: 37544
Number of extensions: 70984
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)