Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m04
         (193 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075548-1|AAL68355.1|   73|Drosophila melanogaster RH49308p pro...    40   5e-04
AY061306-1|AAL28854.1|  743|Drosophila melanogaster LD22256p pro...    29   0.90 
AJ635208-1|CAG25590.1| 1153|Drosophila melanogaster CAP-G protei...    29   0.90 
AE013599-1638|AAS64861.1|  743|Drosophila melanogaster CG17054-P...    29   0.90 
AE013599-1634|AAF58425.4| 1153|Drosophila melanogaster CG17054-P...    29   0.90 
BT024412-1|ABC86474.1|  528|Drosophila melanogaster IP03823p pro...    26   8.4  
AE014297-3888|AAF56541.1| 1270|Drosophila melanogaster CG8968-PA...    26   8.4  
AE014297-1249|AAF54597.2|  529|Drosophila melanogaster CG15902-P...    26   8.4  

>AY075548-1|AAL68355.1|   73|Drosophila melanogaster RH49308p
           protein.
          Length = 73

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = -1

Query: 193 ITASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMR 68
           IT  + +P + ++      +GN +RR++ +R+SR +YQRD R
Sbjct: 12  ITTLLSVPIYAMYGLDKLMIGNAFRRNMNERFSRVMYQRDFR 53



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 66 LAGNPYEVNGLEAIP 22
          L  NPY++NGL+AIP
Sbjct: 54 LTDNPYKMNGLDAIP 68


>AY061306-1|AAL28854.1|  743|Drosophila melanogaster LD22256p
           protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 124 YRRSLTDRWSRALYQRDMR 68
           +RR++ +R+SR +YQRD R
Sbjct: 705 FRRNMDERFSRVMYQRDFR 723



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 66  LAGNPYEVNGLEAIP 22
           L  NPY++NGL+AIP
Sbjct: 724 LTDNPYKMNGLDAIP 738


>AJ635208-1|CAG25590.1| 1153|Drosophila melanogaster CAP-G protein
            protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 124  YRRSLTDRWSRALYQRDMR 68
            +RR++ +R+SR +YQRD R
Sbjct: 1115 FRRNMDERFSRVMYQRDFR 1133



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 66   LAGNPYEVNGLEAIP 22
            L  NPY++NGL+AIP
Sbjct: 1134 LTDNPYKMNGLDAIP 1148


>AE013599-1638|AAS64861.1|  743|Drosophila melanogaster CG17054-PE,
           isoform E protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 124 YRRSLTDRWSRALYQRDMR 68
           +RR++ +R+SR +YQRD R
Sbjct: 705 FRRNMDERFSRVMYQRDFR 723



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 66  LAGNPYEVNGLEAIP 22
           L  NPY++NGL+AIP
Sbjct: 724 LTDNPYKMNGLDAIP 738


>AE013599-1634|AAF58425.4| 1153|Drosophila melanogaster CG17054-PA,
            isoform A protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 124  YRRSLTDRWSRALYQRDMR 68
            +RR++ +R+SR +YQRD R
Sbjct: 1115 FRRNMDERFSRVMYQRDFR 1133



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 66   LAGNPYEVNGLEAIP 22
            L  NPY++NGL+AIP
Sbjct: 1134 LTDNPYKMNGLDAIP 1148


>BT024412-1|ABC86474.1|  528|Drosophila melanogaster IP03823p
           protein.
          Length = 528

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 39  HSLHKDYQLSLISLWYNARLHLSVSE 116
           H +HK   ++ I +WYN  + L   E
Sbjct: 63  HCMHKIEDVTFIRIWYNNNVFLEFEE 88


>AE014297-3888|AAF56541.1| 1270|Drosophila melanogaster CG8968-PA
           protein.
          Length = 1270

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 59  PAKPHIPL-VQRTTPSISKRASIMIA*KIIMTPPQSPTRQS 178
           P   H P  +Q T  S  +  S + A   I+TPP  P R S
Sbjct: 717 PTPAHSPAAIQGTVTSPPQSTSAVSAAMAILTPPSKPARFS 757


>AE014297-1249|AAF54597.2|  529|Drosophila melanogaster CG15902-PA
           protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 39  HSLHKDYQLSLISLWYNARLHLSVSE 116
           H +HK   ++ I +WYN  + L   E
Sbjct: 64  HCMHKIEDVTFIRIWYNNNVFLEFEE 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,407
Number of Sequences: 53049
Number of extensions: 126184
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 24,988,368
effective HSP length: 43
effective length of database: 22,707,261
effective search space used: 454145220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)