Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m04
         (193 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    25   7.4  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    25   9.8  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    25   9.8  

>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 59  PAKPHIPLVQRTTPS---ISKRASIMIA*KIIMTPPQSP 166
           P   H+P+   TTPS    S  +S   A     TPP+SP
Sbjct: 17  PVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSP 55


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 59  PAKPHIPLVQRTTPS---ISKRASIMIA*KIIMTPPQSP 166
           P   H+P+   TTPS    S  +S   A     TPP+SP
Sbjct: 27  PVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSP 65


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  NYXG*LPSHSLHKDYQLSLISLWYNARLHL 104
           NY   +P+H L++ Y L+ + L +N  + L
Sbjct: 714 NYINEIPAHDLNRLYSLTKLDLSHNRLISL 743


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  NYXG*LPSHSLHKDYQLSLISLWYNARLHL 104
           NY   +P+H L++ Y L+ + L +N  + L
Sbjct: 714 NYINEIPAHDLNRLYSLTKLDLSHNRLISL 743


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 181 IGLPGWGLWWCHNYFL 134
           I L GW +W+  N+FL
Sbjct: 529 INLYGWYIWYTENHFL 544


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 181 IGLPGWGLWWCHNYFL 134
           I L GW +W+  N+FL
Sbjct: 529 INLYGWYIWYTENHFL 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,370
Number of Sequences: 27780
Number of extensions: 61244
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)