Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m04
         (193 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   1.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   3.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   4.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   4.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   4.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    19   4.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    18   9.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    18   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           18   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 81  WYNARLHLSVSERL-**LPRK*L*HHHSPQPGNPI 182
           W++   H+SV+++L   +P   +   ++  PGNP+
Sbjct: 156 WHSPEAHISVAQKLQKEIPNSIILDQYT-NPGNPL 189


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 99  GVVRCTRGI*GLAGNPYEVNGL 34
           G+V+C +G   L G P    G+
Sbjct: 57  GIVQCAKGPDELCGGPQNYLGI 78


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   YFTTSIXRDSFQAIHFIRITS*ASY 75
           YF  ++  D+FQ+I  + +   A++
Sbjct: 114 YFARTVPPDTFQSIALVDVVKSANW 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 190 TASIGLPGWGLWWCHNYFL 134
           +A + LPG  +W C  +F+
Sbjct: 365 SAVLELPGSSIWSCLFFFM 383


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 190 TASIGLPGWGLWWCHNYFL 134
           +A + LPG  +W C  +F+
Sbjct: 418 SAVLELPGSSIWSCLFFFM 436


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   YFTTSIXRDSFQAIHFIRITS*ASY 75
           YF  ++  D+FQ+I  + +   A++
Sbjct: 204 YFARTVPPDTFQSIALVDVVKSANW 228


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 49  IRITS*ASYPSGTTH 93
           + I+  A YPS TTH
Sbjct: 787 LNISDIALYPSQTTH 801


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 69  GLAGNPYEVNG 37
           GL+G P  +NG
Sbjct: 157 GLSGKPLSING 167


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 130 NHYRRSLTDRWS 95
           +HYRR+  DR++
Sbjct: 133 SHYRRTRRDRYT 144


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 69  GLAGNPYEVNG 37
           GL+G P  +NG
Sbjct: 123 GLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 69 GLAGNPYEVNG 37
          GL+G P  +NG
Sbjct: 33 GLSGKPLSING 43


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 143 IMTPPQSPTRQSN*SCN 193
           I  PP +P  + N  CN
Sbjct: 463 IRVPPGTPIYECNKRCN 479


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 152 PPQSPTRQS 178
           PPQ PT +S
Sbjct: 454 PPQLPTEES 462


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 3   FYYFNYXG 26
           FYY+ Y G
Sbjct: 438 FYYYTYKG 445


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 3   FYYFNYXG 26
           FYY+ Y G
Sbjct: 438 FYYYTYKG 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,203
Number of Sequences: 438
Number of extensions: 902
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)