Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m03
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.53 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.70 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.92 
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   2.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   2.8  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   3.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   6.5  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 741  RDSKDTESQWYFGRTLSPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 568
            RDS   ++  +  ++ SP+ +II T  +    +C+ F         + P S  +YA C
Sbjct: 1946 RDSPAKQAPQF--QSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -1

Query: 341 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVE----NP 174
           ++N    + K F + Q  E +KD   +   FHVF ++    LAY       S+     N 
Sbjct: 292 RSNHSGIESKTFKKYQVIEALKDPVTWLFTFHVFCNQLSNNLAYQQNLLFTSLNVSDLNS 351

Query: 173 RVLGVVGMGH--VDGIIKYY 120
            ++GV   G+  V  II  Y
Sbjct: 352 TLVGVASAGYNCVSAIIATY 371


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 398 RHLATEKLVLLLFESVDLRDTIYIQEFFA 484
           R LAT  L+ L +   DLRD + IQE  A
Sbjct: 560 RRLATSTLIRLFYYYYDLRDAVPIQETLA 588


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 599 GQNLVTGMLHAMLLKTYADIAKELGVAPG 513
           GQ  + GMLHA L  +YA+ + +    PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 183 GKSTRTRSSWHGSCGRNYQVLWKDE 109
           G     + SWH    RN + +WKDE
Sbjct: 3   GGDLNMKKSWHPLLMRNQEKVWKDE 27


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 359 NPKPLDKNNLEKYKDKEFVQSQF 291
           NPK L K     +KDKE+  S +
Sbjct: 648 NPKELSKKKTTDFKDKEYYMSHY 670


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 195 CSFSGKSTRTRSSWHGSCGRNYQVLWKDEARRHCS 91
           C+ S K ++ +  W   CGR    L K   +  CS
Sbjct: 126 CTSSLKQSKQKRLWKEHCGRERAFLRKKRTKIQCS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,840
Number of Sequences: 5004
Number of extensions: 61780
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)