Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m03
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448... 48 1e-09
08_02_1466 + 27322340-27322610,27322907-27322995,27323276-273233... 40 0.002
03_06_0426 + 33855701-33856135 29 2.9
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 29 3.9
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199... 29 5.2
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 9.0
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 9.0
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 28 9.0
>05_05_0367 -
24444268-24444393,24444524-24444635,24444721-24444821,
24445727-24445831,24445929-24446015,24446630-24446689,
24446834-24446881,24447571-24447816
Length = 294
Score = 48.4 bits (110), Expect(2) = 1e-09
Identities = 33/102 (32%), Positives = 49/102 (48%)
Frame = -1
Query: 737 IVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLL 558
++ L P + +ELC RV+ + D K K+ N G+L++ L
Sbjct: 91 VIDYLKPQAVFLELCASRVAILTPQNLQVPTMNEMIDMWKKKK----MNTF-GILYSWFL 145
Query: 557 KTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQI 432
A +A +L V PG EFR A+ E G K+ LGDRP+Q+
Sbjct: 146 ---AKVASQLDVLPGAEFRVAFEEAMSYGG-KVILGDRPVQL 183
Score = 31.9 bits (69), Expect(2) = 1e-09
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -1
Query: 320 KDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGHV 141
KD E V I + AF + + ERD ++ L + + E+ V+ VVG GHV
Sbjct: 184 KDMEDVDMLTLVIQEMSKAFPTLMETLLHERDMYMSSKLLKVAK--EHSSVVAVVGKGHV 241
Query: 140 DGIIK 126
GI K
Sbjct: 242 SGIKK 246
>08_02_1466 +
27322340-27322610,27322907-27322995,27323276-27323368,
27323515-27323613,27323763-27324017
Length = 268
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/107 (24%), Positives = 54/107 (50%)
Frame = -1
Query: 449 DRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDV 270
+RP + RA++SLS E +++ + D + +D++ S +E K
Sbjct: 114 NRPFGEELERAWKSLSWDEKTKLVVSLFRGITSTTDTS-----QDEKAAGSPYELYEKLS 168
Query: 269 PAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGHVDGII 129
++ + + ERD LA+SL+ ++ V+G++G GH++G++
Sbjct: 169 ISYPSLLQPLIHERDMFLAWSLKRSKAVNKSKTVVGIIGKGHMNGVV 215
>03_06_0426 + 33855701-33856135
Length = 144
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 572 HAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARA 417
H + ++ A A GV G E R +MQ++P C++ + + + + RA
Sbjct: 46 HGLFARSLALFADLHGVRGGEELDRKARKMQRLPPCRILSQELDVLVELDRA 97
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 66 WRRRNQEQRNNVFLLHLS 119
WRRR Q QR+N LLH++
Sbjct: 71 WRRRGQSQRSNNSLLHIT 88
>02_05_1155 +
34519080-34519313,34519622-34519665,34519901-34519973,
34520895-34521043,34521698-34521859,34522301-34522360,
34522716-34522776
Length = 260
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 231 KG*MSCIFIARVCSFSGKSTRTRSSWHGSCG 139
KG SC+ +A +C S SWH + G
Sbjct: 175 KGDFSCLTVAGICEASTSDAIGSGSWHSNAG 205
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -1
Query: 422 RAFQSLSVYELGQVLYHISTSNPKPLD---KNNLEKYKDKE 309
RAF V E G+VL + +P+P D + N++K KDKE
Sbjct: 182 RAFCGALVEETGRVLAVPAPPSPRPPDLEAEENVDKDKDKE 222
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = -1
Query: 455 LGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKY----KDKEFVQSQFE 288
LG+RP+ + + S E Q+ +++ + KP+ + L +Y ++ Q++FE
Sbjct: 499 LGERPLDRSTKSSSSSFPAKEAIQLQSNLADNFVKPISLDGLPEYEKPFRNDPAKQARFE 558
Query: 287 EIIKD 273
+ +KD
Sbjct: 559 QFLKD 563
>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 467 CKLYLGDRPIQITIARAFQ-SLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQF 291
C L +PI I Q +L + + L +IS S K L+ ++L + + ++++F
Sbjct: 1090 CFLSAETKPIAAIINSILQQALELRSCFKSLNYISESTVKQLNLDSLINFSQVDAIRTKF 1149
Query: 290 EEIIKDV 270
E IKD+
Sbjct: 1150 EGNIKDL 1156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,929
Number of Sequences: 37544
Number of extensions: 368089
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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