Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m03
(743 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein. 141 3e-33
BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein. 141 3e-33
AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein pr... 141 3e-33
AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA seq... 141 3e-33
AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA seq... 141 3e-33
AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA seq... 141 3e-33
BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein. 131 2e-30
AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein. 36 0.12
BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-l... 33 1.4
AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-l... 33 1.4
AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent ... 33 1.4
>DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein.
Length = 376
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 95 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 155 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 214
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 215 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 270
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 271 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 306
>BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein.
Length = 330
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 49 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 108
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 109 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 168
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 169 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 224
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 225 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 260
>AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein
protein.
Length = 376
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 95 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 155 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 214
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 215 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 270
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 271 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 306
>AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 304
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 23 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 82
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 83 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 142
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 143 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 198
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 199 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 234
>AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 309
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 28 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 87
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 88 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 147
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 148 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 203
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 204 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 239
>AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 376
Score = 141 bits (341), Expect = 3e-33
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 95 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 155 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 214
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 215 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 270
Query: 194 VRSVENPR-------------VLGVVGMGHVDGIIK 126
R +E PR V+GVVGMGHV GI K
Sbjct: 271 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 306
>BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein.
Length = 292
Score = 131 bits (317), Expect = 2e-30
Identities = 66/188 (35%), Positives = 112/188 (59%)
Frame = -1
Query: 734 VKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 555
++ + P+ ++VELC+ RVS +A+ +KL+QAV+ L++G++ +LLK
Sbjct: 95 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
Query: 554 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 375
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 155 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 214
Query: 374 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 195
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 215 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 270
Query: 194 VRSVENPR 171
R +E PR
Sbjct: 271 ARRLELPR 278
>AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein.
Length = 145
Score = 36.3 bits (80), Expect = 0.12
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -1
Query: 341 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR 171
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 78 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPR 131
>BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 32.7 bits (71), Expect = 1.4
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 353 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 180
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 179 NPRVLGVVGMGHVDGIIKYY 120
N G H D + ++
Sbjct: 146 NDICFGA---AHADDLFPFF 162
>AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 32.7 bits (71), Expect = 1.4
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 353 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 180
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 179 NPRVLGVVGMGHVDGIIKYY 120
N G H D + ++
Sbjct: 146 NDICFGA---AHADDLFPFF 162
>AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent
mitochondrial RNA helicase protein.
Length = 786
Score = 32.7 bits (71), Expect = 1.4
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 353 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 180
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 179 NPRVLGVVGMGHVDGIIKYY 120
N G H D + ++
Sbjct: 146 NDICFGA---AHADDLFPFF 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,509,996
Number of Sequences: 237096
Number of extensions: 2081194
Number of successful extensions: 4318
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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