Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m03
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070575-1|AAL48046.1|  532|Drosophila melanogaster RE12073p pro...   140   2e-33
AE014297-1620|AAN14341.1|  532|Drosophila melanogaster CG12360-P...   140   2e-33
AE014297-1619|AAF54893.1|  532|Drosophila melanogaster CG12360-P...   140   2e-33

>AY070575-1|AAL48046.1|  532|Drosophila melanogaster RE12073p
           protein.
          Length = 532

 Score =  140 bits (339), Expect = 2e-33
 Identities = 75/217 (34%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
 Frame = -1

Query: 743 SEIVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAM 564
           S +++ + P+ ++VELC  R+            +AK+ +  K++  +     + G+   +
Sbjct: 270 SYVIRNVRPDVVMVELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFIL 329

Query: 563 LLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQ 384
           LL+  A IAK+LG+APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++  +
Sbjct: 330 LLQMSAQIAKDLGMAPGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMK 389

Query: 383 VLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
           +++ ++ ++   +++  +E+ K  + ++   +E+  + PAF     VFV ERD  L +SL
Sbjct: 390 LVWRLTFTDSISIEE--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSL 444

Query: 203 QECV--------RSVENPRVLGVVGMGHVDGIIKYYG 117
           Q           + V   RV+GVVG+GH +GI K +G
Sbjct: 445 QLAALPQAAPGGQQVRPVRVVGVVGIGHANGIAKMWG 481


>AE014297-1620|AAN14341.1|  532|Drosophila melanogaster CG12360-PB,
           isoform B protein.
          Length = 532

 Score =  140 bits (339), Expect = 2e-33
 Identities = 75/217 (34%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
 Frame = -1

Query: 743 SEIVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAM 564
           S +++ + P+ ++VELC  R+            +AK+ +  K++  +     + G+   +
Sbjct: 270 SYVIRNVRPDVVMVELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFIL 329

Query: 563 LLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQ 384
           LL+  A IAK+LG+APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++  +
Sbjct: 330 LLQMSAQIAKDLGMAPGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMK 389

Query: 383 VLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
           +++ ++ ++   +++  +E+ K  + ++   +E+  + PAF     VFV ERD  L +SL
Sbjct: 390 LVWRLTFTDSISIEE--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSL 444

Query: 203 QECV--------RSVENPRVLGVVGMGHVDGIIKYYG 117
           Q           + V   RV+GVVG+GH +GI K +G
Sbjct: 445 QLAALPQAAPGGQQVRPVRVVGVVGIGHANGIAKMWG 481


>AE014297-1619|AAF54893.1|  532|Drosophila melanogaster CG12360-PA,
           isoform A protein.
          Length = 532

 Score =  140 bits (339), Expect = 2e-33
 Identities = 75/217 (34%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
 Frame = -1

Query: 743 SEIVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAM 564
           S +++ + P+ ++VELC  R+            +AK+ +  K++  +     + G+   +
Sbjct: 270 SYVIRNVRPDVVMVELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFIL 329

Query: 563 LLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQ 384
           LL+  A IAK+LG+APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++  +
Sbjct: 330 LLQMSAQIAKDLGMAPGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMK 389

Query: 383 VLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
           +++ ++ ++   +++  +E+ K  + ++   +E+  + PAF     VFV ERD  L +SL
Sbjct: 390 LVWRLTFTDSISIEE--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSL 444

Query: 203 QECV--------RSVENPRVLGVVGMGHVDGIIKYYG 117
           Q           + V   RV+GVVG+GH +GI K +G
Sbjct: 445 QLAALPQAAPGGQQVRPVRVVGVVGIGHANGIAKMWG 481


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,946,049
Number of Sequences: 53049
Number of extensions: 635855
Number of successful extensions: 1502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)