Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m03
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...   124   7e-29
U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical pr...   124   7e-29
Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    29   3.5  
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score =  124 bits (299), Expect = 7e-29
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 17/222 (7%)
 Frame = -1

Query: 743 SEIVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAM 564
           S  ++ + P+ +++ELC  R+S           +AK+ +S+K+ Q +K    + G+LH +
Sbjct: 175 SNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVL 234

Query: 563 LLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQ 384
           LL   A + +EL +APGGEFR A+        C++ LGDRPIQ+T+ RA  SLS+++  +
Sbjct: 235 LLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIR 294

Query: 383 VLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
             +H++ S+ + +    +E+ K ++ ++    E+  D P   ++  +FV+ERD  + ++L
Sbjct: 295 FFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFP---QLSQIFVEERDAYMTHAL 351

Query: 203 QECV--RSVENP---------------RVLGVVGMGHVDGII 129
              V   SVE                  V+ VVG+GH  GI+
Sbjct: 352 HMLVHRNSVEKRAQWLRGTTGQQFQPLTVVAVVGIGHTPGIV 393


>U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A5.2b protein.
          Length = 450

 Score =  124 bits (299), Expect = 7e-29
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 17/222 (7%)
 Frame = -1

Query: 743 SEIVKILNPNGILVELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAM 564
           S  ++ + P+ +++ELC  R+S           +AK+ +S+K+ Q +K    + G+LH +
Sbjct: 173 SNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVL 232

Query: 563 LLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQ 384
           LL   A + +EL +APGGEFR A+        C++ LGDRPIQ+T+ RA  SLS+++  +
Sbjct: 233 LLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIR 292

Query: 383 VLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
             +H++ S+ + +    +E+ K ++ ++    E+  D P   ++  +FV+ERD  + ++L
Sbjct: 293 FFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFP---QLSQIFVEERDAYMTHAL 349

Query: 203 QECV--RSVENP---------------RVLGVVGMGHVDGII 129
              V   SVE                  V+ VVG+GH  GI+
Sbjct: 350 HMLVHRNSVEKRAQWLRGTTGQQFQPLTVVAVVGIGHTPGIV 391


>Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical
           protein W01B6.5 protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -1

Query: 401 VYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPA-FKKIFH--VFV-D 234
           V+  G V++ I  +  +P D  N +  ++    ++QF ++    P+  +K+    VF  D
Sbjct: 453 VFSFGCVIWEIYENGNQPHDGKNAQTIRNLT-KKNQFLKLTNSAPSELRKLIEERVFTSD 511

Query: 233 ERDKCLAYSLQECVRSVENPRV 168
             ++C   ++ +C   +E P V
Sbjct: 512 PENRCSMTTIVQCAEKIEKPPV 533


>Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical
           protein F17A2.3 protein.
          Length = 463

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/104 (25%), Positives = 44/104 (42%)
 Frame = -1

Query: 488 EMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKE 309
           E++KI   +L + +   +  +   FQS S Y+L      I   N +  D     K KD  
Sbjct: 204 ELRKILEAELDVEEEDGEQIVEHNFQSTSSYKLNIKTAAIHQVNHQESDHTRPNKSKDLR 263

Query: 308 FVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVEN 177
              S+ + + +D+PA  K     + E D     + Q   RSV +
Sbjct: 264 --SSEDQVLTEDLPAASKTPPASISELDMGEQGAEQRVTRSVHS 305


>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -1

Query: 374 HISTSNPKPLDKNNLEKYK---DKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 204
           H    N   L+  +L ++K   D   V+ +FE++      F  + HVFV E DK L +  
Sbjct: 547 HYLIQNSDELESLHLNRFKSDDDMRCVKKRFEKVKCKKCQFFDLSHVFV-EGDKYLTFDR 605

Query: 203 QECVRSVENPRVLGVVGM 150
              +  V+N   L   G+
Sbjct: 606 DSLISYVDNTIHLTSAGL 623


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 323 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 153
           Y D ++VQ +    I D   +P   K+ H  + E  +         + SVENP VL VV 
Sbjct: 357 YTDGKYVQVKVAATISDQHKLPELAKLNHPTLGEEARVNTNVFNFTMESVENPNVLRVVP 416

Query: 152 MGHV 141
             +V
Sbjct: 417 KHYV 420


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -1

Query: 323 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 153
           Y D +++Q +    I D   +P   K+ H  + +  +         + SVENP VL VV 
Sbjct: 377 YTDGKYLQMKVAASISDQNKLPELAKLNHPTLGQEARVNTNVFNFTMESVENPNVLTVVP 436

Query: 152 MGHVDGIIKYYGK 114
             +V  I    G+
Sbjct: 437 KHYVHAITYLEGR 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,819
Number of Sequences: 27780
Number of extensions: 343284
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)