Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m02
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    29   1.5  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    29   1.5  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = -2

Query: 369 FQVLKF--TINIHLEMEDTTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVCH-KTPL 199
           F +L F   +NI+  +E T +  KN+   VK+       D +  +  + +C +C  +   
Sbjct: 554 FAILLFHVIVNIYKRLEHTVSFIKNRNAAVKNINRLSKADVVQLREREDVCAICFIEMKE 613

Query: 198 QTRIYH-SHLFCTECFHKYIWTAPKRDC 118
           + RI    H F   C  K  W A K  C
Sbjct: 614 EARITPCKHYFHGPCLRK--WLAVKMVC 639


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 360 LKFTINIHLEMEDTTTQQKNKTTIVKDEIDG 268
           LK  + +H E ED T +Q +  T VKD I G
Sbjct: 475 LKKPLQVHYETEDVTAKQGDDYTAVKDGILG 505


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 360 LKFTINIHLEMEDTTTQQKNKTTIVKDEIDG 268
           LK  + +H E ED T +Q +  T VKD I G
Sbjct: 475 LKKPLQVHYETEDVTAKQGDDYTAVKDGILG 505


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 185 TTAIYFAPNVFISTYGQHRKETVRETWISHREIIE 81
           +T IYF+ N+F + Y   +    ++ W  HR++ +
Sbjct: 216 STIIYFSLNIFRTVYRHTKHRKSKKNWEIHRQLFQ 250


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -2

Query: 354 FTINIHLEMEDTTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVCHKTPLQTRIYHSH 175
           F +    +    T+ +  K  + K   D +  + IS  T D  C  CH   ++     +H
Sbjct: 246 FCVKCGADYHAPTSCETIKQWMTKCADDSETANYISAHTKD--CPQCHSC-IEKAGGCNH 302

Query: 174 LFCTECFHKYIW 139
           + CT C H + W
Sbjct: 303 IQCTRCRHHFCW 314


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 321 TTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVC 214
           T+  Q+    I+   +DG +Y   SYK  D LC  C
Sbjct: 152 TSPDQRIHECILYSLLDGNWYSLNSYKGADELCNGC 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,489
Number of Sequences: 27780
Number of extensions: 208793
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)