Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m01
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.47 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.62 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    29   1.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.4  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        27   4.4  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.6  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   7.6  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 147 VAPFKSYTSQQLL*PLLKTINPTDRTIFCG*VDLYIFKSIMEPSSEKSDTIFR 305
           V    S   +Q L PLL+ I+PT+     G   ++  K +  P  E  D + +
Sbjct: 34  VVEVDSLVHEQDLRPLLEFISPTESWFLLGTATIFYIKLLTHPDPESIDVVIK 86


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 289 RTPFFGRNLLIMTLIINTSLKYIIKTYLDILFRYFGKKATDKISSELFK*NSFT 450
           R   F    L++ +  + +LKYI  +  D++F    KKAT    SE  K N+ T
Sbjct: 729 RFGMFSEATLLINMSGSKNLKYIHSSSRDLIFEMENKKATGNEQSEKGKENAKT 782


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 591 REKKNTYVYLHLPIYSLLKTSFLVTSSLKSLNY 493
           RE KNTY Y+ L +Y ++   F++   +KS  Y
Sbjct: 508 REGKNTYAYIELQLYEVMPGCFML--DVKSNGY 538


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 645 FESL-SLESDSNFKLIKGPREKKNTYVYLH-LPIYSL 541
           FES  S +SD NF  I  P   + TY++L  LP+ S+
Sbjct: 206 FESQNSSDSDCNFVSISSPEFWERTYMFLELLPLQSI 242


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 586 KKKHLRLPTPTYLFIIKNVIPCDFLSKI 503
           K+ HL +P P ++  + + IP DF  ++
Sbjct: 82  KQSHLYIPFPAHINCLNDYIPSDFKQRL 109


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 546 SLLKTSF-LVTSSLKSLNY*IFNEFIIVFYSLRSKTILFK*FRRDFVGSLFPEISKQNV 373
           S LK+ +  V  +L S     F+E +   Y +R K +L+K    D  G +F E S   V
Sbjct: 96  SRLKSGYKTVIFALSSAPLSDFDELLPAVYEIREKDVLYKKEDADKYGFIFNENSVPRV 154


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 191 RLKKLLTCVTFKRCDLLFKFF 129
           R+    TC TF R DLLFKFF
Sbjct: 67  RVTAYCTCDTF-RVDLLFKFF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,316
Number of Sequences: 5004
Number of extensions: 62795
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)