Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m01
         (836 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040521-1|AAH40521.1| 1134|Homo sapiens testis expressed 2 prot...    30   9.0  
AL834251-1|CAD38927.1| 1127|Homo sapiens hypothetical protein pr...    30   9.0  
AB051525-1|BAB21829.2| 1127|Homo sapiens KIAA1738 protein protein.     30   9.0  

>BC040521-1|AAH40521.1| 1134|Homo sapiens testis expressed 2
           protein.
          Length = 1134

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 683 TTAAHPKESAPHHLNHFHLRVIQILNLSRDRVKKKTPTSTY 561
           +T   PKES PH   H HL    + +LS D  ++++ T +Y
Sbjct: 196 STEVEPKES-PHPARHRHLMKTLVKSLSTDTSRQESDTVSY 235


>AL834251-1|CAD38927.1| 1127|Homo sapiens hypothetical protein
           protein.
          Length = 1127

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 683 TTAAHPKESAPHHLNHFHLRVIQILNLSRDRVKKKTPTSTY 561
           +T   PKES PH   H HL    + +LS D  ++++ T +Y
Sbjct: 196 STEVEPKES-PHPARHRHLMKTLVKSLSTDTSRQESDTVSY 235


>AB051525-1|BAB21829.2| 1127|Homo sapiens KIAA1738 protein protein.
          Length = 1127

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 683 TTAAHPKESAPHHLNHFHLRVIQILNLSRDRVKKKTPTSTY 561
           +T   PKES PH   H HL    + +LS D  ++++ T +Y
Sbjct: 196 STEVEPKES-PHPARHRHLMKTLVKSLSTDTSRQESDTVSY 235


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,934,809
Number of Sequences: 237096
Number of extensions: 1931502
Number of successful extensions: 2769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)