Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m01
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    32   0.58 
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    32   0.58 
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    32   0.58 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 205 SILQIGLYSADESIYIYLNPLWSPHPKNRTPFFGRNLLIMTLIINTSLKYI 357
           S+ ++GL + DES ++ + P   PHP +R P       I  L     L+Y+
Sbjct: 707 SVAELGLTNFDESCFLDIEPYMHPHP-HRVPLNTSLPFIFRLFRGLGLRYL 756


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 205 SILQIGLYSADESIYIYLNPLWSPHPKNRTPFFGRNLLIMTLIINTSLKYI 357
           S+ ++GL + DES ++ + P   PHP +R P       I  L     L+Y+
Sbjct: 707 SVAELGLTNFDESCFLDIEPYMHPHP-HRVPLNTSLPFIFRLFRGLGLRYL 756


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 205 SILQIGLYSADESIYIYLNPLWSPHPKNRTPFFGRNLLIMTLIINTSLKYI 357
           S+ ++GL + DES ++ + P   PHP +R P       I  L     L+Y+
Sbjct: 707 SVAELGLTNFDESCFLDIEPYMHPHP-HRVPLNTSLPFIFRLFRGLGLRYL 756


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 223 LYSADESIYIYLNPLWSPHPKNRTPFFGRNLLIMTLIINTSLKYIIKTYLDILFRY 390
           L   D S Y+  +   +P P+N T    + +    ++IN SL  I +TY D+   Y
Sbjct: 251 LVDCDYSKYVVFDNFGNPSPRNDTND-AQAIACGKMVINLSLNSIWETYNDVYNSY 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,278
Number of Sequences: 27780
Number of extensions: 333180
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)