Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13l24
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-3|AAB09111.2| 399|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 30 1.9
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 30 1.9
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 30 1.9
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 30 1.9
Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68114-8|CAA92162.1| 317|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 4.5
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 28 5.9
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 28 7.8
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 7.8
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 7.8
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 7.8
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 7.8
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 28 7.8
>U70848-3|AAB09111.2| 399|Caenorhabditis elegans Hypothetical
protein C43G2.4 protein.
Length = 399
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 261 IDMKKDKHTHSKTKLHFYEDDKNKDPSILPDVTSDKFV 148
ID+ ++ H H KLH Y + KN+DP + ++KF+
Sbjct: 361 IDLSRNAHKHPP-KLHTYLEMKNQDPEEYKNRKNNKFI 397
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 722 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 772
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 1435 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 1485
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 471 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 521
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 722 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 772
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 1435 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 1485
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 2 PDC*KKKCKHANKELNNEILTP 67
P C KK C HA+ +L E +TP
Sbjct: 177 PHCQKKGCNHAHHDLQGEYITP 198
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 2 PDC*KKKCKHANKELNNEILTP 67
P C KK C HA+ +L E +TP
Sbjct: 177 PHCQKKGCNHAHHDLQGEYITP 198
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 742 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 792
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 165 TSDKFVEHT--AEELNRIYSDSFIKKCFCTSSTRRGVKISLLSSLFACLHF 19
T D F + +E+L+R+YSDS + + F S RG + AC+ F
Sbjct: 1455 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAF 1505
>Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical
protein T08G5.2 protein.
Length = 728
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 675 VENSENKVLGLRSLVHESLAQPHGLSV---KKPHGACSCMMKSPTSFNHQTDPT 523
V+N E +L L+ ++A PHG +V PH +M++ T+ +HQ T
Sbjct: 352 VQNQELNLLLFDFLIGVTVAPPHGPTVTTMSTPHTTMKTIMQNLTTSSHQVATT 405
>Z68114-8|CAA92162.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.11 protein.
Length = 317
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 75 LMTCKNIFL*NCHYKFCSVPRLCVRRICRMSHL-VI*KGPYSCRLHKNEA*SYCAYVCLS 251
+ T +N+ NC ++ SV LC+ ++ ++SHL + Y H SYC Y
Sbjct: 36 MQTLRNVLFCNCIFQTISVVLLCLLQLRQVSHLKPMEIWCYGPLRHFEAIISYCLYFVSQ 95
Query: 252 SYRYPNN 272
S +N
Sbjct: 96 STSVVSN 102
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 498 YEVASVPSSLPYTQYPAFYVPFQS 427
Y V+ P+ PY YP +Y FQS
Sbjct: 326 YPVSQFPNQYPYGSYPYYYPYFQS 349
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 273 DYLGIDMKKDKHTHSKTKLHFYE--DDKNKDPSILPDVTSDKFVEHTAEELNRI 118
DYLG K+K TH K + Y + ++PD T+ +F+E NR+
Sbjct: 1806 DYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRV 1859
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = -3
Query: 294 YYDKETDDYLGIDMKKDKHTHSKTKLHFYEDDKNKDPSIL--PDVTSDKFVEHTA----E 133
++ +T Y D++T S + LH + D +PS+ P++T DK H
Sbjct: 472 FWHPDTRSYWKDQFAFDRYTGSSSNLHIWND--MNEPSVFSGPEITMDKESIHYGGIEHR 529
Query: 132 ELNRIYSDSFIKKCFCTSSTRRGVK 58
E++ +Y + F R G K
Sbjct: 530 EIHNMYGMMYTSATFDGMIARTGGK 554
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = -3
Query: 294 YYDKETDDYLGIDMKKDKHTHSKTKLHFYEDDKNKDPSIL--PDVTSDKFVEHTA----E 133
++ +T Y D++T S + LH + D +PS+ P++T DK H
Sbjct: 486 FWHPDTRSYWKDQFAFDRYTGSSSNLHIWND--MNEPSVFSGPEITMDKESIHYGGIEHR 543
Query: 132 ELNRIYSDSFIKKCFCTSSTRRGVK 58
E++ +Y + F R G K
Sbjct: 544 EIHNMYGMMYTSATFDGMIARTGGK 568
>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
protein ZK675.2 protein.
Length = 1027
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 207 EDDKNKDPSILPDVTSDKFVEHTAEELN-RIYSD 109
ED+ +K+P I+P VT D V+ ++N R+ +D
Sbjct: 841 EDELDKEPVIIPAVTEDLEVQSIPRQINFRVAND 874
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 273 DYLGIDMKKDKHTHSKTKLHFYE--DDKNKDPSILPDVTSDKFVEHTAEELNRI 118
DYLG K+K TH K + Y + ++PD T+ +F+E NR+
Sbjct: 1806 DYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRV 1859
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -3
Query: 621 LAQPHGLSVKKPHGACSCMMKSPTSFNHQTDPTKICTHTDKYEVASVPSSLPYTQYPA 448
+ +P LS ACS + +S N I H+DK E S SS PY P+
Sbjct: 772 MVRPRRLSDSSVGSACSDSESNASSIN------MIARHSDKTETTSATSSDPYGPSPS 823
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -3
Query: 621 LAQPHGLSVKKPHGACSCMMKSPTSFNHQTDPTKICTHTDKYEVASVPSSLPYTQYPA 448
+ +P LS ACS + +S N I H+DK E S SS PY P+
Sbjct: 772 MVRPRRLSDSSVGSACSDSESNASSIN------MIARHSDKTETTSATSSDPYGPSPS 823
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 237 THSKTKLHFYEDDKNKDPSILPDVTSDKFVEHT--AEELNRIYSDSFI 100
T K K E ++ L D+ FVEHT +++ +Y DS++
Sbjct: 34 TKEKAKRKRAEKEETDHGMTLHDIIKTSFVEHTLSVDQIRDLYPDSYV 81
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 237 THSKTKLHFYEDDKNKDPSILPDVTSDKFVEHT--AEELNRIYSDSFI 100
T K K E ++ L D+ FVEHT +++ +Y DS++
Sbjct: 34 TKEKAKRKRAEKEETDHGMTLHDIIKTSFVEHTLSVDQIRDLYPDSYV 81
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 237 THSKTKLHFYEDDKNKDPSILPDVTSDKFVEHT--AEELNRIYSDSFI 100
T K K E ++ L D+ FVEHT +++ +Y DS++
Sbjct: 34 TKEKAKRKRAEKEETDHGMTLHDIIKTSFVEHTLSVDQIRDLYPDSYV 81
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 237 THSKTKLHFYEDDKNKDPSILPDVTSDKFVEHT--AEELNRIYSDSFI 100
T K K E ++ L D+ FVEHT +++ +Y DS++
Sbjct: 34 TKEKAKRKRAEKEETDHGMTLHDIIKTSFVEHTLSVDQIRDLYPDSYV 81
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -3
Query: 621 LAQPHGLSVKKPHGACSCMMKSPTSFNHQTDPTKICTHTDKYEVASVPSSLPYTQYPA 448
+ +P LS ACS + +S N I H+DK E S SS PY P+
Sbjct: 772 MVRPRRLSDSSVGSACSDSESNASSIN------MIARHSDKTETTSATSSDPYGPSPS 823
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,503
Number of Sequences: 27780
Number of extensions: 353542
Number of successful extensions: 965
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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