Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l23
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.53 
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   6.5  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   6.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = -2

Query: 433 KDALKLNPNADTPTIYCPLFLYAMVVSTDITKSSRNGYRRGAGLHLSPKYNPDLNMSLNE 254
           +  LKL    +T T+ CP+F+   ++ T+         R    + + PK N   N S ++
Sbjct: 215 RQILKLIGRRETKTMPCPVFVVGAIIGTNGQNLKSIMDRTSTRIQI-PKRNNTANES-SD 272

Query: 253 DAGHPVSPDRLLARNFDPWVP 191
           DA  P   +   A   D   P
Sbjct: 273 DAKKPEKEENSAASTLDDLEP 293


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 390 IVGVSAFGFNFSASLMKNDWHFLNL 464
           +VG+  FGFNF + ++ N  H   L
Sbjct: 432 LVGIPTFGFNFRSDIISNCLHKFKL 456


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 600 RLQPRSVLPLALLRSHLVRPLPRRAXSPASLSVRLPVRQRR 478
           R++  S LPL L +      LPR+      + +R P R++R
Sbjct: 75  RIEKPSTLPLELTQEVQEVRLPRKDAESLEIGIRQPEREKR 115


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 576 PLALLRSHLVRPLPRRAXSPASLSVRLPVRQRRKIRAIN-SKNANRSSSKTH*S*IRTLT 400
           P  L + HL  P  + A    S   R P+R    +R+ + S+    SS+ ++ S  R L 
Sbjct: 492 PSVLKQLHLANPNRQAASFNFSGPKRAPIRPLSNLRSFSKSQKEETSSNSSNSSGTRRLG 551

Query: 399 LP 394
           LP
Sbjct: 552 LP 553


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 290 WT*MKTSSAAVTVS*RLRYISTNYHSV 370
           W+  +   AAV++S  L+YI TN H V
Sbjct: 164 WSCAQLLLAAVSISTDLKYIPTNQHIV 190


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 346 ITKSSRNGYRRGAGLHLSPKYNPDLNMSLN 257
           + K S   YR+   LHL   + P L MSL+
Sbjct: 296 LLKESHQIYRKMVSLHLELLHLPQLEMSLD 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,346
Number of Sequences: 5004
Number of extensions: 44112
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)