Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13l23
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0247 + 10925329-10925566,10925744-10926357,10926723-109272... 31 0.71
07_03_0698 - 20765305-20768526 29 2.2
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 29 2.9
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 3.8
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 28 6.6
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 28 6.6
03_01_0182 - 1466097-1466147,1466197-1466331,1466659-1466777,146... 28 6.6
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 28 6.6
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 27 8.7
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 27 8.7
03_05_0210 - 22018050-22018382,22018496-22018646,22018841-22019052 27 8.7
01_05_0385 + 21671662-21671714,21671907-21672033,21672177-21672278 27 8.7
>05_03_0247 +
10925329-10925566,10925744-10926357,10926723-10927238,
10927376-10927504
Length = 498
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 145 VCPKDGCKQTPPPKLTDPCPKGNPCLNFPI 56
+CP +G P P+ PCP G C+N P+
Sbjct: 162 ICPDNGRPARPFPQGKFPCPGGAGCMNPPL 191
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 268 MSLNEDAGHPVSPDRLLARNFDPWVPIPSWTELKREKKQPVVCPKDGC-KQTPPPKLTDP 92
+ L D G+ P L + D P+P +E +K+QP+ +G K+ PPP ++
Sbjct: 260 LPLQSDGGNKEQPPPLQSEGGDKEQPLPLQSE-GGDKEQPLPLQSEGGDKEQPPPLQSEG 318
Query: 91 CPKGNP 74
K P
Sbjct: 319 GDKEQP 324
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 340 KSSRNGYRRGAGLHLSPKYNPDLNMSLNEDAG 245
K +G RRG GLH +P Y PD N + +E G
Sbjct: 611 KDRGSGRRRGIGLHHAPPY-PDDNETGDEQGG 641
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 202 PWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFP 59
P +P+PS L KK+ + P TPPP P P P L P
Sbjct: 28 PSLPLPS--ALMPPKKRRLFTPAPRHAATPPPPPPPPTPAVEPTLPIP 73
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 478 SSLADREADRQACRAXGTAGEGADKVGAEEGKGEDTSGLEAD 603
S L + + + +CR GE +D+ +++ +GED S ++D
Sbjct: 79 SPLREFDLEFSSCREKDEKGEDSDEDESDDDRGEDESDEDSD 120
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 409 NADTPTIYCPLFLYAMVVSTDITKSSRNG 323
N D+P +Y PL+L A V + + SS NG
Sbjct: 72 NNDSPLLYTPLYLAADYVYSVVWYSSTNG 100
>03_01_0182 -
1466097-1466147,1466197-1466331,1466659-1466777,
1467005-1467064,1467206-1467296,1467767-1467955,
1469310-1469393,1469540-1469701,1469790-1469933,
1470053-1470247
Length = 409
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 597 LQPRSVLPLALLRSHLVRPLPRRAXSPASLSVR 499
L P V L LR+H RPLP R P ++V+
Sbjct: 15 LAPAPVSHLLPLRAHHARPLPARLPPPPRVAVQ 47
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -2
Query: 241 PVSPDRLLARNFDPWVPIPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNF 62
P S + +P+ IP E +RE+K+ CP + P+L + P +F
Sbjct: 586 PQSHGKKYCSKGEPFTLIPRNREREREEKRSAQCPDATDQSRFSPRLVSFLRRAEPSRSF 645
Query: 61 PIR 53
+R
Sbjct: 646 SLR 648
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 199 WVPIPSWTELKREKKQPVVCPKDGCKQTPPPK--LT--DP-CPKGN 77
++P P + EKK CPK CK P PK LT DP PK N
Sbjct: 14 FLPFPLGISQRSEKKSSEYCPK--CKLIPIPKSQLTTYDPQIPKSN 57
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 169 KREKKQPVVCPKDGCKQTPPPKLTDPCPKGNP 74
KR + +P P+D PPPK + P P+G P
Sbjct: 88 KRGRGRPPK-PRDPNAPPPPPKPSSPRPRGRP 118
>03_05_0210 - 22018050-22018382,22018496-22018646,22018841-22019052
Length = 231
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 487 ADREADRQACRAXG 528
ADREADR+ CRA G
Sbjct: 155 ADREADRRRCRAGG 168
>01_05_0385 + 21671662-21671714,21671907-21672033,21672177-21672278
Length = 93
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 514 CRAXGTAGEGADKVGAEEG--KGEDTSGLEAD 603
CR GEG KVG G KG+D G+ +
Sbjct: 23 CRVVEEVGEGGSKVGKRAGAAKGKDVVGVSVE 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,713
Number of Sequences: 37544
Number of extensions: 302016
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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