Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l23
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.76 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   5.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.4  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -2

Query: 301 HLSPKYNPDLNMSLNEDAGHPVSPDRLLARNFDPWVPIPSWTELKREKKQPVVCPKDG 128
           HLSP +N + +      A       RL+      W+  P+   ++R K   + C   G
Sbjct: 674 HLSPDHNGNYSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVERNKHVALHCQAQG 731



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 313 GAGLHLSPKYNPDLNMSLNEDAGHPVS 233
           GA L  +   +P LN+  +   GHPV+
Sbjct: 47  GAWLDCTATGSPPLNIDWSTADGHPVN 73


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 391 IYCPLFLYAMVVSTDITKSSRN 326
           I C LF+Y +   T+  +S R+
Sbjct: 10  IVCALFIYTVTAETEEGQSGRS 31


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 391 IYCPLFLYAMVVSTDITKSSRN 326
           I C LF+Y +   T+  +S R+
Sbjct: 10  IVCALFIYTVTAETEEGQSGRS 31


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 179 PRRYRYPGIKISSQ 220
           PR Y YP I IS +
Sbjct: 523 PRNYMYPNIDISPE 536


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 313 GAGLHLSPKYNPDLNMSLNEDAGHPVS 233
           GA L  +   +P LN+  +   GHPV+
Sbjct: 47  GAWLDCTATGSPPLNIDWSTADGHPVN 73


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 113  WRLLAAIFRTDDRLLLLP 166
            W++  A+ ++ DRL  LP
Sbjct: 1310 WKVRGAVLQSSDRLRQLP 1327


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 142  CPKDGCKQTPPPKLTDPCP 86
            C   G  Q+  P +TDP P
Sbjct: 973  CQPGGVVQSQQPIMTDPSP 991


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 446 LAFFEFIARIFLLW 487
           LAF+ FI    LLW
Sbjct: 393 LAFWSFIVSTILLW 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,970
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)