Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l22
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    32   0.11 
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    30   0.32 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    28   1.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.0  

>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 435 YLLNTIKKPVYLRFLN-LFGNNFDQTTC 355
           YLLN + KP Y RFLN  F +N +  TC
Sbjct: 205 YLLNFLLKPAYYRFLNHKFKHNLNPLTC 232


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -1

Query: 606 IELIAEYFKEKPELVLLNVAGNNIGDAGARALSFGLPFSKIRALDVS 466
           + ++ EYFKE P++  + VA   I  A  +ALSF L ++K    D S
Sbjct: 839 VNVVTEYFKENPDMSFV-VAKVPI-SANPKALSFALTYAKKNLKDKS 883


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 97  KCICFIKLMSLLTIDFYSFLLFNFFPNYFTNRLVA 201
           KCI        L   FY  LL +F P Y  +RLV+
Sbjct: 562 KCISLSNFNVFLEYVFYGTLLMHFEPTYALSRLVS 596


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 83  YFFSEHILYYCNIKFVYRLCHVC 15
           +  +E I Y C +   +R+CHVC
Sbjct: 82  FICAEGITYSCVLPCNHRMCHVC 104


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 516 ALSFGLPFSKIRALDVSKNKLNAKGVLYLLNTIK--KPV 406
           +L F L  SK+++ D+S + +N+K     L+  K  KP+
Sbjct: 850 SLEFILKCSKVKSYDISPSSINSKEAFVCLDRSKESKPI 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,179
Number of Sequences: 5004
Number of extensions: 51333
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)