Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l22
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    33   0.003
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 24/89 (26%), Positives = 48/89 (53%)
 Frame = -1

Query: 720 LQNXEFIGHDIEYILRGLRKNKTLLYLDLGYNKIRDYGIELIAEYFKEKPELVLLNVAGN 541
           L+  +  G+++  +   LR    L  LDLG N+I ++        F+   +L  L + GN
Sbjct: 433 LKELDLSGNELTSVPDALRDLALLKTLDLGENRISNF----YNGSFRNLDQLTGLRLIGN 488

Query: 540 NIGDAGARALSFGLPFSKIRALDVSKNKL 454
           +IG+  +R + + LP   ++ L++++NK+
Sbjct: 489 DIGNL-SRGMLWDLP--NLQILNLARNKV 514


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 110 KQMHLISNYYFFS 72
           K MH  +NYY FS
Sbjct: 82  KSMHTATNYYLFS 94


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 434 YKTPLAFNLFFETSKARIFENGSPKLSARAPASPMLFPATFNSTNSGFSLKYSAIN 601
           YK   ++  + ETSK R  +    + S        L   T ++ N+   L+Y  IN
Sbjct: 272 YKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNIN 327


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 434 YKTPLAFNLFFETSKARIFENGSPKLSARAPASPMLFPATFNSTNSGFSLKYSAIN 601
           YK   ++  + ETSK R  +    + S        L   T ++ N+   L+Y  IN
Sbjct: 283 YKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNIN 338


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 434 YKTPLAFNLFFETSKARIFENGSPKLSARAPASPMLFPATFNSTNSGFSLKYSAIN 601
           YK   ++  + ETSK R  +    + S        L   T ++ N+   L+Y  IN
Sbjct: 283 YKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNIN 338


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 434 YKTPLAFNLFFETSKARIFENGSPKLSARAPASPMLFPATFNSTNSGFSLKYSAIN 601
           YK   ++  + ETSK R  +    + S        L   T ++ N+   L+Y  IN
Sbjct: 272 YKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNIN 327


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 281 PDS*ILTSIVC*KSTPLNNI 340
           PD  + TS  C   TPL NI
Sbjct: 38  PDLSVFTSPACGSETPLTNI 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,914
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)