Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l18
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   3.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   5.5  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   9.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.5  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    25   9.5  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 42  NNFAEIIPNKRIVLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFY 194
           ++ A ++ N+++ +   N   +     D+ +  ILV S SQ+D  Y   FY
Sbjct: 289 SDLAHLVKNRKVYMYYENGSQLLALDKDASNDAILVTSMSQIDNIYDNGFY 339


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 180 CT*YLLDYLNSPI*IYVWNQKIYTISRYYYLFP 82
           C   LLD LNS   IY+ ++++  +++ + LFP
Sbjct: 526 CIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFP 558


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 532  NVSNATSKSLSIFKDILRLLNLHT 603
            N+ + +S +LSI KD+  L +LHT
Sbjct: 1109 NIYSTSSTTLSILKDVQELKSLHT 1132


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 95  IICFQHYSFVWDYF 54
           +  F+H SF+W+YF
Sbjct: 304 VFSFEHLSFIWNYF 317


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 129 WNQKIYTISRYYYLFPALFVCLGL 58
           WN K +T+S+ + L  A  +CLG+
Sbjct: 231 WNGKFFTLSQSFKLHLADALCLGV 254


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 416 SQRQILEKSRLKILPLEKKNTLPGSATRILICESS 312
           SQ  +L K++ K+LPL +K T         +C  S
Sbjct: 312 SQSIVLLKNKKKLLPLSRKGTFAVIGPNAKVCNYS 346


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 422 NDMKTYKHYM*NIGQSCHMFKLQSVNYLMFFFFT*DGMFQMPLP 553
           +D K +K  +   G+  H FK +  +++  F F  +    +PLP
Sbjct: 58  SDTKLWKRLLKITGKQAHQFKDKPFSHIFAFLFLHELSAILPLP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,934
Number of Sequences: 5004
Number of extensions: 64170
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)