Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l10
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98084-1|CAA66708.1|  177|Homo sapiens alpha S1-casein protein.        29   6.9  
X78416-1|CAA55185.1|  185|Homo sapiens alpha s1 casein protein.        29   6.9  
U23157-1|AAA69477.1|  185|Homo sapiens pro-alpha-S1-casein protein.    29   6.9  
DQ064604-1|AAY68392.1|  177|Homo sapiens casein protein.               29   6.9  
BC128228-1|AAI28229.1|  185|Homo sapiens casein alpha s1 protein.      29   6.9  
BC128227-1|AAI28228.1|  185|Homo sapiens casein alpha s1 protein.      29   6.9  
AL050071-1|CAB43256.1|  407|Homo sapiens hypothetical protein pr...    28   9.1  

>X98084-1|CAA66708.1|  177|Homo sapiens alpha S1-casein protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 147 IMQYVPFPPFSDISNPTAHENYEKNNVML 175


>X78416-1|CAA55185.1|  185|Homo sapiens alpha s1 casein protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 155 IMQYVPFPPFSDISNPTAHENYEKNNVML 183


>U23157-1|AAA69477.1|  185|Homo sapiens pro-alpha-S1-casein protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 155 IMQYVPFPPFSDISNPTAHENYEKNNVML 183


>DQ064604-1|AAY68392.1|  177|Homo sapiens casein protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 147 IMQYVPFPPFSDISNPTAHENYEKNNVML 175


>BC128228-1|AAI28229.1|  185|Homo sapiens casein alpha s1 protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 155 IMQYVPFPPFSDISNPTAHENYEKNNVML 183


>BC128227-1|AAI28228.1|  185|Homo sapiens casein alpha s1 protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 LVRYDPFPELQQXENTNPHQNIVKENLLL 48
           +++Y PFP      N   H+N  K N++L
Sbjct: 155 IMQYVPFPPFSDISNPTAHENYEKNNVML 183


>AL050071-1|CAB43256.1|  407|Homo sapiens hypothetical protein
           protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 122 DPFPELQQXENTNPHQNIVKENLLLHSE 39
           DP+P+  + EN NP  N+++++ L   E
Sbjct: 322 DPYPDSVKKENKNPVNNLIRKDYLEEPE 349


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,010,620
Number of Sequences: 237096
Number of extensions: 549318
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)