Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13l09
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U00050-8|AAM22062.1| 363|Caenorhabditis elegans Hypothetical pr... 30 1.7
U00050-7|AAA50696.1| 386|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 28 7.0
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 28 7.0
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 28 7.0
U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated k... 28 7.0
U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated k... 28 7.0
AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated... 28 7.0
Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z81509-6|CAB04153.2| 431|Caenorhabditis elegans Hypothetical pr... 28 9.2
>Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical
protein T24H10.6 protein.
Length = 95
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/92 (25%), Positives = 50/92 (54%)
Frame = -3
Query: 391 INNINPVIDRIMEDESVEGVIMTNKDGCPIMTNVNAAGATNYALALHRFGVMVQTCVKEM 212
+++ I R+ ++ V G+I+ + G I + +++ ++ L + +T ++E+
Sbjct: 1 MSDFEETIRRLQSEKGVVGIIVVDSAGRVIHSTIDSDATQSHTAFLQQLCEKTKTSIREL 60
Query: 211 DPFDAVLVMRLHTKKKEIMVVPDPSFNIIVLQ 116
D + + +RL TKK EIM+ PD I+V++
Sbjct: 61 DSSNDLTFLRLRTKKNEIMIAPDKDHVIMVIK 92
>U00050-8|AAM22062.1| 363|Caenorhabditis elegans Hypothetical
protein F09F7.4b protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 499 KNLI**QDSFV*IEMKIVRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMT 323
KNL +DSF ++ + A L +DG +W +A + ++P ++ + EG M+
Sbjct: 239 KNLAQIRDSFKAKSVEEILASLEKDGSDWAKKQAATLGKMSPTSLKVTHRQITEGSKMS 297
>U00050-7|AAA50696.1| 386|Caenorhabditis elegans Hypothetical
protein F09F7.4a protein.
Length = 386
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 499 KNLI**QDSFV*IEMKIVRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMT 323
KNL +DSF ++ + A L +DG +W +A + ++P ++ + EG M+
Sbjct: 262 KNLAQIRDSFKAKSVEEILASLEKDGSDWAKKQAATLGKMSPTSLKVTHRQITEGSKMS 320
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 723 QKTQSKCT--HCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 565
QK + C +C++ +++Y T H+ T + + R+ R+E+ + H++
Sbjct: 257 QKNEVNCKWRYCERSFKQTYEFTAHKRTHTKQKLYCCEVCPKRYGRLENLKTHRR 311
>Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical
protein R07H5.9 protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 726 CQKTQSKCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQKF 562
C+ ++S+ + S + TC+ S ++ KS K+R S SK H+KF
Sbjct: 137 CEVSESRSSSVTASSSAPTSTTCYDSEPTKSDTSKKSSKKSRKSSRSSKVPHRKF 191
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 796 FKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEI 617
FK + I T R+ + + YL+++ + + P T + + ++ PLN ++ E
Sbjct: 90 FKSEEIDTALRLSNNDVEKAIQYLTREISGLDSAPITASSSVEKSKYPLNDLVRNQFVES 149
Query: 616 DIED 605
D ED
Sbjct: 150 DEED 153
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 796 FKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEI 617
FK + I T R+ + + YL+++ + + P T + + ++ PLN ++ E
Sbjct: 90 FKSEEIDTALRLSNNDVEKAIQYLTREISGLDSAPITASSSVEKSKYPLNDLVRNQFVES 149
Query: 616 DIED 605
D ED
Sbjct: 150 DEED 153
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 796 FKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEI 617
FK + I T R+ + + YL+++ + + P T + + ++ PLN ++ E
Sbjct: 90 FKSEEIDTALRLSNNDVEKAIQYLTREISGLDSAPITASSSVEKSKYPLNDLVRNQFVES 149
Query: 616 DIED 605
D ED
Sbjct: 150 DEED 153
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 796 FKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEI 617
FK + I T R+ + + YL+++ + + P T + + ++ PLN ++ E
Sbjct: 90 FKSEEIDTALRLSNNDVEKAIQYLTREISGLDSAPITASSSVEKSKYPLNDLVRNQFVES 149
Query: 616 DIED 605
D ED
Sbjct: 150 DEED 153
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 778 KTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 599
+ + + EE +VV VL Y + + V +N+ + RAV +ED
Sbjct: 486 RPIVQNEEQGHVVNVLL----TFSRYDVSSPIGLVFDKNVAATGNNTNRAVKVCTVEDNS 541
Query: 598 VAYRIETKTSEVLVA 554
+A + K +VLVA
Sbjct: 542 LADKAAFKPGDVLVA 556
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 778 KTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 599
+ + + EE +VV VL Y + + V +N+ + RAV +ED
Sbjct: 315 RPIVQNEEQGHVVNVLL----TFSRYDVSSPIGLVFDKNVAATGNNTNRAVKVCTVEDNS 370
Query: 598 VAYRIETKTSEVLVA 554
+A + K +VLVA
Sbjct: 371 LADKAAFKPGDVLVA 385
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 778 KTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 599
+ + + EE +VV VL Y + + V +N+ + RAV +ED
Sbjct: 315 RPIVQNEEQGHVVNVLL----TFSRYDVSSPIGLVFDKNVAATGNNTNRAVKVCTVEDNS 370
Query: 598 VAYRIETKTSEVLVA 554
+A + K +VLVA
Sbjct: 371 LADKAAFKPGDVLVA 385
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 778 KTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 599
+ + + EE +VV VL Y + + V +N+ + RAV +ED
Sbjct: 486 RPIVQNEEQGHVVNVLL----TFSRYDVSSPIGLVFDKNVAATGNNTNRAVKVCTVEDNS 541
Query: 598 VAYRIETKTSEVLVA 554
+A + K +VLVA
Sbjct: 542 LADKAAFKPGDVLVA 556
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 778 KTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 599
+ + + EE +VV VL Y + + V +N+ + RAV +ED
Sbjct: 486 RPIVQNEEQGHVVNVLL----TFSRYDVSSPIGLVFDKNVAATGNNTNRAVKVCTVEDNS 541
Query: 598 VAYRIETKTSEVLVA 554
+A + K +VLVA
Sbjct: 542 LADKAAFKPGDVLVA 556
>U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform b protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 637 QRAVTEIDIEDTLVAYRIETKTSEV---LVASDLDFTACVVHRIKRKHKKN 494
+ ++ +ID+ + VA + + K +V L+A D C+ +R++ HK+N
Sbjct: 120 ESSIVDIDVVQS-VAEKFDVKEEDVTGALLAEDHHHFLCIAYRLEVNHKRN 169
>U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 637 QRAVTEIDIEDTLVAYRIETKTSEV---LVASDLDFTACVVHRIKRKHKKN 494
+ ++ +ID+ + VA + + K +V L+A D C+ +R++ HK+N
Sbjct: 291 ESSIVDIDVVQS-VAEKFDVKEEDVTGALLAEDHHHFLCIAYRLEVNHKRN 340
>AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated
protein kinase alphasubunit 2 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 637 QRAVTEIDIEDTLVAYRIETKTSEV---LVASDLDFTACVVHRIKRKHKKN 494
+ ++ +ID+ + VA + + K +V L+A D C+ +R++ HK+N
Sbjct: 291 ESSIVDIDVVQS-VAEKFDVKEEDVTGALLAEDHHHFLCIAYRLEVNHKRN 340
>Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical
protein F21A3.2b protein.
Length = 544
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +3
Query: 570 DVFVSIL-YATNVSSISISVTARCILALSG-----GRFLHRTCAT--VSGNVYIWTASFD 725
D SI+ Y T++S + SV RC + L G R++HR T V G Y + D
Sbjct: 118 DTLKSIVEYGTDISDLEHSVEGRCAVFLDGQKHSVWRYIHRVNLTGLVPGTRYFYHVGSD 177
Query: 726 RYRTP 740
+P
Sbjct: 178 HGWSP 182
>Z81509-6|CAB04153.2| 431|Caenorhabditis elegans Hypothetical
protein F21A3.2a protein.
Length = 431
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +3
Query: 570 DVFVSIL-YATNVSSISISVTARCILALSG-----GRFLHRTCAT--VSGNVYIWTASFD 725
D SI+ Y T++S + SV RC + L G R++HR T V G Y + D
Sbjct: 5 DTLKSIVEYGTDISDLEHSVEGRCAVFLDGQKHSVWRYIHRVNLTGLVPGTRYFYHVGSD 64
Query: 726 RYRTP 740
+P
Sbjct: 65 HGWSP 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,591,135
Number of Sequences: 27780
Number of extensions: 396734
Number of successful extensions: 1153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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