Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13l05
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 184 1e-47
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 173 2e-44
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 72 8e-14
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 68 2e-12
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 49 9e-07
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 44 3e-05
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 44 3e-05
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 40 4e-04
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 40 5e-04
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 35 0.015
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 34 0.027
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.036
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 33 0.047
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 31 0.19
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.3
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.1
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 7.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 7.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 9.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 9.4
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 184 bits (449), Expect = 1e-47
Identities = 96/206 (46%), Positives = 127/206 (61%), Gaps = 8/206 (3%)
Frame = -1
Query: 795 LSVKGNNNIYESFKDYISTELLDGDNKYDAGEHGLQEAEKGVRFDVFPPVLHLHLLRFQY 616
L+VKG + + +SF+D I E L GDNKY A HGLQ+A KG+ F+ P VL L L RF Y
Sbjct: 368 LNVKGMDTLEDSFRDAIQVETLTGDNKYYAEGHGLQDAHKGIIFESLPNVLQLQLKRFDY 427
Query: 615 DPQRDASVKFNDRFEFYEEINLDPYLQE-VPSTPSH-YTLHAVLVHSGDNHGGHYVVFIN 442
D RD VK NDR EF EI+L+PYL E + SH Y LH VLVH GD HGGHY I
Sbjct: 428 DMLRDMMVKINDRHEFPLEIDLEPYLSETADKSESHVYVLHGVLVHGGDLHGGHYYALIK 487
Query: 441 PKGDGKWCKFDDDVVSRCTKQEAIEYNYGG------KEDAPHMARKATSAYMLIYIQTTQ 280
P+ D W KFDDD V+R T +E +E NYGG K + ++ +AYML+Y + ++
Sbjct: 488 PEKDSNWFKFDDDRVTRATIKEVLEDNYGGEPAGRAKGYNGNPFKRFMNAYMLVYFRKSR 547
Query: 279 LKYVLQDASESDIPPDLCDRINEEMR 202
L ++L + D+P + + ++EE R
Sbjct: 548 LDHILSPVTAEDVPFHVRNTLDEEHR 573
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 173 bits (422), Expect = 2e-44
Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 8/206 (3%)
Frame = -1
Query: 795 LSVKGNNNIYESFKDYISTELLDGDNKYDAGEHGLQEAEKGVRFDVFPPVLHLHLLRFQY 616
L+VKG N+ +SF+ YI E L+GDN Y A +G QEA+KGV F+ FPP+LHL L RF+Y
Sbjct: 351 LNVKGMKNLEDSFRSYIQVETLEGDNCYFADTYGFQEAKKGVIFESFPPILHLQLKRFEY 410
Query: 615 DPQRDASVKFNDRFEFYEEINLDPYL--QEVPSTPSHYTLHAVLVHSGDNHGGHYVVFIN 442
D +RD +K NDR+EF E + +L + S Y L+ VLVHSGD H GHY +
Sbjct: 411 DFERDMMIKINDRYEFPLEFDAKAFLSPEADQSQNCEYVLYGVLVHSGDLHNGHYYALLK 470
Query: 441 PKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKE------DAPHMARKATSAYMLIYIQTTQ 280
+ DG W K+DD V+R T +E +E NYGG +P ++ SAYML+Y++ +
Sbjct: 471 TEKDGPWYKYDDTRVTRATLREVLEENYGGDYIMHPPFRSPVKLKRFMSAYMLLYLRKDK 530
Query: 279 LKYVLQDASESDIPPDLCDRINEEMR 202
L ++ S +IP L + +N ++
Sbjct: 531 LDELMNPVSADEIPEHLKEALNPSIQ 556
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 72.1 bits (169), Expect = 8e-14
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Frame = -1
Query: 795 LSVKGNNNIYESFKDYISTELLDGDNKYDAGE-HGLQEAEKGVRFDVFPPVLHLHLLRFQ 619
+ ++ + ++ + + ++E+L NK+ LQEAEK ++ P +L LHL RF+
Sbjct: 262 IDIENHTSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFK 321
Query: 618 YDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVH-SGDNHGGHYVVFIN 442
Y+ ++ K F E+ L ++ + Y L +V+VH G H GHYV +
Sbjct: 322 YNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSVIVHVGGGPHRGHYVSIVR 381
Query: 441 PKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPHMARKATSAYMLIY 295
K G W FDD+ V+ + ++ +G D P A +AY+L Y
Sbjct: 382 TKTYG-WVLFDDENVTP-VNENYLQRFFG---DQPGQA----TAYVLFY 421
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 67.7 bits (158), Expect = 2e-12
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 795 LSVKGNNNIYESFKDYISTELLDGDNKYDAGE-HGLQEAEKGVRFDVFPPVLHLHLLRFQ 619
+ KG++ + +S K ++ E L NKY L +A K + P +L +H RF
Sbjct: 279 VDAKGSS-LADSLKHFVHAEKLTKQNKYRCENCKQLVDASKQMTIYRAPNILTIHFKRFT 337
Query: 618 YDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDN-HGGHYVVFIN 442
++ + S K + + + E NL PY+ + P+ Y L VLVH+G + GHY F
Sbjct: 338 FNGFQ--SSKISKQISYPESFNLGPYMSD-PNCSCWYELIGVLVHAGGSTRSGHYYSFCK 394
Query: 441 PKGDGKWCKFDDDVVS 394
+G W KFDDD VS
Sbjct: 395 -SSNGVWLKFDDDFVS 409
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 48.8 bits (111), Expect = 9e-07
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Frame = -1
Query: 732 LDGDN-KYDAGEHGLQEAEKGVRFD-VFPPVLHLHLLRFQYDPQRDASV---KFNDRFEF 568
L DN KY + A K + D PPV +HL RF + D K +D EF
Sbjct: 715 LTSDNDKYSFNNSVYRNAYKRMLLDDPLPPVFIIHLKRFFQEISHDGYANPKKISDFIEF 774
Query: 567 YEEINLDPYLQEV--PSTPSHYTLHAVLVHSGDNHGGHYVVFI 445
+E++L+ ++ S+ Y L V+VHSG + GHYV ++
Sbjct: 775 EQELDLNEFVMPHLRASSSFRYRLFGVIVHSGTLNYGHYVAYV 817
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 44.0 bits (99), Expect = 3e-05
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 3/133 (2%)
Frame = -1
Query: 684 AEKGVRFDVFPPVLHLHLLRFQYDPQRDASVKFND-RFEFYEEINLDPYLQEV-PSTPSH 511
A K + + PPVL LHL RF Y+ + + I + + V S
Sbjct: 376 ATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPARLSIPQNVFSPSVRGSIHPE 435
Query: 510 YTLHAVLVHSGDN-HGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAPH 334
Y L+AV+ H G + GGHY V + W + DD + R +
Sbjct: 436 YDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSK 495
Query: 333 MARKATSAYMLIY 295
+ AY+L Y
Sbjct: 496 LGHGDRVAYLLFY 508
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 534 EVPSTPSHYTLHAVLVHSGDN-HGGHYVVFINPKGDGK--WCKFDDDVVSRCTKQE 376
E + P +Y L A++ H G + H GHYV FI + DGK W F+D+ V + E
Sbjct: 705 ESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQVASLE 760
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 39.9 bits (89), Expect = 4e-04
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = -1
Query: 690 QEAEKGVRFDVFPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLD------PY-LQE 532
++A K + P +L HL RF +R K +D EF + NLD Y L E
Sbjct: 855 RQASKQMEIWRCPEILIFHLKRFS--SERRFRDKIDDLVEFPID-NLDMSMRTGSYKLSE 911
Query: 531 VPSTPSHYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 370
+ Y L+AV H G GGHY F +G++ FDD V+ +E +
Sbjct: 912 KENPKLIYELYAVDNHYGGLGGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETV 965
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 39.5 bits (88), Expect = 5e-04
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = -1
Query: 774 NIYESFKDYISTELLDGDNKYDAGEHGLQE-AEKGVRFDVFPPVLHLHLLRFQYDP--QR 604
++ E + + ELL G + + +Q A+K + P L + + RF+ ++
Sbjct: 267 SLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRK 326
Query: 603 DASVKFNDRFEFYEEINLDPYLQE-VPSTPSHYTLHAVLVHSGDNHGGHYVVFINPKGDG 427
+ ++ + P Q + PS+Y L A + H G GHY+ + +
Sbjct: 327 KIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGHYISDV--LFNN 384
Query: 426 KWCKFDDDVV 397
+WC DD +V
Sbjct: 385 EWCHIDDSIV 394
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 34.7 bits (76), Expect = 0.015
Identities = 25/116 (21%), Positives = 48/116 (41%)
Frame = -1
Query: 717 KYDAGEHGLQEAEKGVRFDVFPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYL 538
+Y G + A K + FD PP + + L RF+ + S K + + + + +
Sbjct: 314 QYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQN-NFAMSTKIDKQVSYPAFLRMRYNF 372
Query: 537 QEVPSTPSHYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 370
+ Y L++V+ H G GHY+ + + +W DD + + E +
Sbjct: 373 NQ---DDVDYQLYSVVCHKGTLDTGHYIAYTYYQ--NQWFLLDDTTIVEVKESEVL 423
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 513 HYTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAI 370
HY L +++ HSG GHY+ + D W K +D ++++ + EA+
Sbjct: 285 HYILRSLITHSGSVTYGHYLCY--RLQDDIWWKANDSLITKSSLNEAL 330
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.5 bits (73), Expect = 0.036
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 510 YTLHAVLVHSGDN-HGGHYVVFI-NPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDAP 337
Y L VL H+G + GHY +I N +W +F+D VS E IE GG E
Sbjct: 397 YDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVS-IVPAEKIETLDGGGE--- 452
Query: 336 HMARKATSAYMLIY 295
A SAY+L+Y
Sbjct: 453 -----ADSAYILLY 461
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 33.1 bits (72), Expect = 0.047
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -1
Query: 738 ELLDGDNKYDAGEHGLQEAEKGVRFDVFPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEE 559
+ LDG + + G + A++ + P +L L + R Q+D K N EF +E
Sbjct: 887 DALDGVFETVNIDMGSETAQRSLCITELPIILQLQIQRVQFDRTTGQPFKSNAFVEFGKE 946
Query: 558 INLDPYLQE 532
+++D Y+++
Sbjct: 947 LSMDRYVED 955
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 516 SH-YTLHAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNYGGKEDA 340
SH Y L AV VH G GHY +I+ + + K++D+ V+ + E G +
Sbjct: 1057 SHSYDLLAVFVHRGQASFGHYWTYIHDFENNVYRKYNDEYVTVVDESEIFADTTGNNAN- 1115
Query: 339 PHM 331
P+M
Sbjct: 1116 PYM 1118
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 31.1 bits (67), Expect = 0.19
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Frame = -1
Query: 753 DYISTELLD-GDNKYDAGEHGLQEAEKGVRFDVFPPVLHLHLLRFQ-YDPQRDASVKFND 580
++ E LD D+ Y G + A K + P +L +HL RF + K D
Sbjct: 698 EFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGGDLRRRRKRRD 757
Query: 579 R-----FEFYEEINLDPYLQEVPSTPSH----YTLHAVLVHSGDNHGGHYVVFINPKGDG 427
F+ + L P++++ S Y L+AV H G GHY +
Sbjct: 758 LVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHYTAYARDASSQ 817
Query: 426 KWCKFDDDVVSRCTKQEAI 370
+ KFDD + ++ +
Sbjct: 818 TFFKFDDTAICEIDPEDIV 836
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 260 TLPNPTYRQISVIESTKKCDTRWRLAD 180
T NP RQ++ IE+ K C W D
Sbjct: 51 TCENPQVRQLAAIEARKLCHKYWSSVD 77
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 600 ASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGG 463
+ V FND Y + + + V + H+ H ++V+SG GG
Sbjct: 405 SEVPFNDSNSIYHLFQSELFPKIVVNESRHHIPHYIIVNSGGIRGG 450
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 651 PVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYL-QEVPSTPSHYTLHAVLV 487
P+L + L DP ++S FN EF I L+ L +E S H VL+
Sbjct: 152 PLLRIPTLAIHLDPSANSSFSFNMETEFVPLIGLENELAKEETSDNGDKYHHPVLL 207
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = +2
Query: 26 TQNSVTKP*LLIYLTNFNANGSSKNTLHQQKLHMKHRTRLICXXXXXXXXXXXXTAISYR 205
+ +S T P ++T+ ++ S +++ L L A+S
Sbjct: 67 SSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSS 126
Query: 206 ISSLIRSQRSGGMSDSEAS 262
SSL+ S S GMS S S
Sbjct: 127 SSSLVASSSSSGMSSSSLS 145
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/74 (18%), Positives = 37/74 (50%)
Frame = -1
Query: 702 EHGLQEAEKGVRFDVFPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPS 523
EH + + V L+ ++LR+ Y+ ++ +++ N R +++++ E+P+
Sbjct: 1255 EHDINSGNAEILCGVIAASLYPNILRYDYEKRQWSTLSTNKRVRIL-DVSVN-NRSELPN 1312
Query: 522 TPSHYTLHAVLVHS 481
PS + + ++ S
Sbjct: 1313 MPSKFVAYTNMMSS 1326
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/51 (25%), Positives = 19/51 (37%)
Frame = -1
Query: 588 FNDRFEFYEEINLDPYLQEVPSTPSHYTLHAVLVHSGDNHGGHYVVFINPK 436
FN EF E+ N + + E P H ++ D HY P+
Sbjct: 1130 FNQHLEFVEQRNTNAMVDEGSDAPFHVGNEYYVIAGSDPSDFHYCFCRQPE 1180
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 358 VVVFDGFLLSATRHHVVVELTPLSVA 435
VVVF G LL+ + + + LTPL +A
Sbjct: 103 VVVFTGELLAKAENMIRMGLTPLEIA 128
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -1
Query: 501 HAVLVHSGDNHGGHYVVFINPKGDGKWCKFDDDVVSRCTKQEAIEYNY--GGKED 343
H V+SG + G +F + K FD + C +Y+Y G K D
Sbjct: 692 HITRVYSGTDDGSSVSIFEDTSSSTKQKIFDQPTTNDCDVMRPRQYSYSAGMKSD 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,543
Number of Sequences: 5004
Number of extensions: 61925
Number of successful extensions: 196
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -