Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l05
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   10.0 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   10.0 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   10.0 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   10.0 

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 21/82 (25%), Positives = 42/82 (51%)
 Frame = -1

Query: 678 KGVRFDVFPPVLHLHLLRFQYDPQRDASVKFNDRFEFYEEINLDPYLQEVPSTPSHYTLH 499
           K ++FDV     H+ +L+F+Y    DA +KF++   +  +I    +++++  TP+ Y  +
Sbjct: 56  KTLQFDV-----HM-MLQFRY---LDARLKFSNIAPYLNQIYGGQFVRDLIWTPTVYVSN 106

Query: 498 AVLVHSGDNHGGHYVVFINPKG 433
                   N+    +V I+P G
Sbjct: 107 EPSSAITGNNVKDVLVSIDPSG 128


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 618 IGTSIGASAARAGTHRISRLSRLPVGRAL 704
           +  S+G+ A  A T R       P+G+AL
Sbjct: 680 VALSLGSEALSAATVRFIEAEPQPIGKAL 708


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 361 LRREGRRPSHGQESHKRLHAYLHSNY 284
           +RR+ RR ++G   H   H   H+N+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANH 286


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 705 GEHGLQEAEKGVRFDVFPPVLH 640
           G+HG    ++ VRF V  P  H
Sbjct: 278 GDHGDHAPKQTVRFKVHDPKAH 299


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 576 FEFYEEINLDPYLQEVPSTPSHY--TLHAVLVHSGDNHGG 463
           FEF ++   D  LQ + +TP  +   L A+  H G  + G
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDHLGTLYPG 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 462 VLRGCRPSERAQREA 506
           +LR  RPS++ +REA
Sbjct: 343 ILRMSRPSDKEEREA 357


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 269 FYKTLPNPTYRQISVIESTKKCDTRW 192
           FYK  P+  YR   V E  K     W
Sbjct: 194 FYKQQPDLNYRNSDVREEMKNIMKFW 219


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 576 FEFYEEINLDPYLQEVPSTPSHY--TLHAVLVHSGDNHGG 463
           FEF ++   D  LQ + +TP  +   L A+  H G  + G
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDHLGTLYPG 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,072
Number of Sequences: 438
Number of extensions: 4935
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)