Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l04
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.7  
L14745-6|AAA27920.1|  173|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical p...    28   6.4  
U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical p...    27   8.5  
AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 579 LLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGL----EEEPSAENDED 430
           +L + LA+ K    K + +    E++    P+ E+PP +    EEE   E DED
Sbjct: 350 VLRLQLAIIKEEQKKEIQQQESEELL----PVAEVPPQVKIQKEEEEEEEEDED 399


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 579 LLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGL----EEEPSAENDED 430
           +L + LA+ K    K + +    E++    P+ E+PP +    EEE   E DED
Sbjct: 350 VLRLQLAIIKEEQKKEIQQQESEELL----PVAEVPPQVKIQKEEEEEEEEDED 399


>L14745-6|AAA27920.1|  173|Caenorhabditis elegans Hypothetical
           protein C02F5.5 protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 195 ARSRASGFKFQPNLNSREEIERFRTSVDDISCDKVTQRLGL 73
           A +  SGF  Q N++ R+EI++   S D+ +  K    +G+
Sbjct: 56  ASAAVSGFNLQQNIDGRDEIKKITGSGDNETRGKAAALVGI 96


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
 Frame = -2

Query: 345 AETTNSSVDDEAKIERELAEMYK--DNSDYQTDRSEADSSSTT 223
           + +++S  D+E+ +EREL E+    D+S+ +T+  +++ +ST+
Sbjct: 525 SSSSSSESDEESSVERELDEVSDGLDDSENETELRKSEIASTS 567


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
 Frame = -2

Query: 330 SSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASG-FKFQPNL 154
           SSV  EA   R L+  +K + + +  R  A       ++  GNL A SRA G F F+ N 
Sbjct: 141 SSVVGEA---RPLSFDHKPSHETEARRIIAAGGWVEFNRVNGNL-ALSRALGDFAFK-NC 195

Query: 153 NSREEIERFRTSVDDISCDKVT---QRLGLTEPPVADTSSGQKMADLISKHI 7
           +++   E+  T+  D+  DK+T   + + L    + D  + Q++ D + + +
Sbjct: 196 DTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKL 247


>U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical
           protein C28H8.1 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 486 IKELPPGLEEEPSAENDEDGTSATLRP 406
           +KE+     + PSAEN +D TS T  P
Sbjct: 67  VKEVDEESNQVPSAENSQDSTSVTQPP 93


>U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical
           protein F08F8.2 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 345 AETTNSSVDDEAKIERELAEMYKDNSDYQTD-RSEADSSSTTVHKEEGNL 199
           A TTN  V    K+ R   ++Y D+S   T    E + + + +  + GN+
Sbjct: 485 ALTTNELVSSHMKLNRSKQQLYADDSGKATHFEKEVEKAGSLLSGKSGNI 534


>AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical
           protein F56D6.6 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 333 NSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGF 172
           NSS   +A  ++  AE  K+N + + D  E D + T    E+     + +A GF
Sbjct: 130 NSSAQMKANFDKNAAES-KENFEKKKDEMEKDFNKTKEENEKKAKEDKKKAEGF 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,783
Number of Sequences: 27780
Number of extensions: 313437
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)