Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l03
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.80 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   4.3  
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    25   7.5  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   7.5  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    25   9.9  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   9.9  
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +3

Query: 90  KV*YSIIT**TYRNPELLQYYSPSH*CILL*GKYVIKIKQKTKAGTQSEMLSST 251
           KV +S++T   YR   LLQ  SPS     L  KY  K K+K    T + +  ST
Sbjct: 732 KVPHSLLTLSIYRRGRLLQQCSPSSVTKYL--KYEEKFKRKRMKKTSNALFQST 783


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 19  YKLRGSNRYXTVRTXPLVVENTKTKFSTASLH 114
           +++R  N   TV+    +  + +TKFST SLH
Sbjct: 706 FEIRYGNPEETVKEMLRIKRSVQTKFSTDSLH 737


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 487 QSRARGRKQETAAARRPYLTYQTNIYTADTIRQTKHKHNGKLTIETFHNV 636
           QS     ++ T    +PY  + TN++       ++ +HNG LT   +H V
Sbjct: 2   QSLRAAFRRRTPIFLKPY-EFSTNVFGLRCRYYSQVRHNGALTDLEYHRV 50


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 517 TAAARRPYLTYQTNIYTADTIRQTKHKHNGKLTIETFHNVPTLR 648
           T+ AR  +LT +  +YT D +R++ H      T + +  +  L+
Sbjct: 272 TSTAR--FLTKKERLYTVDRVRRSNHSGIESKTFKKYQVIEALK 313


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 597 LMFCLSYRIGRIYICLICKVGATRGCGF 514
           L++C++YR   IY+ LI ++    G GF
Sbjct: 173 LLYCMAYRANWIYLILIGRM--LNGIGF 198


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 290 GDCG*DAMMNHLFCTRQHFRLCSCFSFL 207
           G CG +       C R HFR  +C +FL
Sbjct: 17  GLCGINRFFTLPKCIRYHFRYFACHTFL 44


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 341 HRVTHDESNVIMNCDDSGDC 282
           H +T D+  V++ CD   DC
Sbjct: 216 HEITDDDEFVVLACDGIWDC 235


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 341 HRVTHDESNVIMNCDDSGDCG*DAMMNHLFCTRQHFRLCSCFS 213
           +R+     NVI + DD G+    + M+HL        +  C S
Sbjct: 193 YRIISPNGNVIQDNDDDGESAAGSRMSHLLTMMSAENVFVCVS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,166
Number of Sequences: 5004
Number of extensions: 47845
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)