Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13l03
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015742-1|AAH15742.1|  414|Homo sapiens POLH protein protein.         31   2.8  
AY388614-1|AAQ81300.1|  713|Homo sapiens polymerase (DNA directe...    31   2.8  
AL355802-25|CAI42642.1|  713|Homo sapiens polymerase (DNA direct...    31   2.8  
AL355802-24|CAI42641.1|  414|Homo sapiens polymerase (DNA direct...    31   2.8  
AL353602-7|CAI12787.1|  713|Homo sapiens polymerase (DNA directe...    31   2.8  
AL353602-6|CAI12786.1|  414|Homo sapiens polymerase (DNA directe...    31   2.8  
AF158185-1|AAD43810.1|  713|Homo sapiens xeroderma pigmentosum v...    31   2.8  
AB038008-1|BAB18601.1|  713|Homo sapiens DNA polymerase eta prot...    31   2.8  
AB024313-1|BAA81666.1|  713|Homo sapiens DNA polymerase eta prot...    31   2.8  

>BC015742-1|AAH15742.1|  414|Homo sapiens POLH protein protein.
          Length = 414

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AY388614-1|AAQ81300.1|  713|Homo sapiens polymerase (DNA directed),
           eta protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AL355802-25|CAI42642.1|  713|Homo sapiens polymerase (DNA
           directed), eta protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AL355802-24|CAI42641.1|  414|Homo sapiens polymerase (DNA
           directed), eta protein.
          Length = 414

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AL353602-7|CAI12787.1|  713|Homo sapiens polymerase (DNA directed),
           eta protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AL353602-6|CAI12786.1|  414|Homo sapiens polymerase (DNA directed),
           eta protein.
          Length = 414

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AF158185-1|AAD43810.1|  713|Homo sapiens xeroderma pigmentosum
           variant RAD30 protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AB038008-1|BAB18601.1|  713|Homo sapiens DNA polymerase eta
           protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


>AB024313-1|BAA81666.1|  713|Homo sapiens DNA polymerase eta
           protein.
          Length = 713

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 CCFLTHLQ-HRVTHDESNVIMNCDDSG 288
           CC LT    H+++HD   VI NC+ SG
Sbjct: 384 CCALTRYDAHKMSHDAFTVIKNCNTSG 410


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,660,052
Number of Sequences: 237096
Number of extensions: 1568921
Number of successful extensions: 3400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3400
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)