Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k24
(715 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC100934-1|AAI00935.1| 288|Homo sapiens apolipoprotein A-I bind... 250 3e-66
BC100933-1|AAI00934.1| 288|Homo sapiens apolipoprotein A-I bind... 250 3e-66
BC100931-1|AAI00932.1| 288|Homo sapiens apolipoprotein A-I bind... 250 3e-66
AL365181-7|CAI13051.1| 288|Homo sapiens apolipoprotein A-I bind... 250 3e-66
AJ315849-1|CAC86580.1| 288|Homo sapiens apoA-I binding protein ... 250 3e-66
AL365181-5|CAI13049.1| 245|Homo sapiens apolipoprotein A-I bind... 190 4e-48
BC100932-1|AAI00933.1| 185|Homo sapiens APOA1BP protein protein. 187 4e-47
BC056917-1|AAH56917.1| 260|Homo sapiens APOA1BP protein protein. 146 5e-35
AL365181-6|CAI13050.1| 260|Homo sapiens apolipoprotein A-I bind... 146 5e-35
BC020948-1|AAH20948.1| 254|Homo sapiens FLJ44968 protein protein. 97 4e-20
BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome, ma... 31 3.1
AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A va... 31 3.1
CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein. 31 4.1
BC032112-1|AAH32112.1| 552|Homo sapiens integrin alpha FG-GAP r... 31 4.1
BC013047-1|AAH13047.1| 552|Homo sapiens integrin alpha FG-GAP r... 31 4.1
BC010521-1|AAH10521.1| 526|Homo sapiens ITFG3 protein protein. 31 4.1
AK057165-1|BAB71374.1| 540|Homo sapiens protein ( Homo sapiens ... 31 4.1
AE006462-12|AAK61220.1| 636|Homo sapiens unknown function protein. 31 4.1
D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58 pr... 31 5.4
AL591545-3|CAI40666.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL591545-1|CAI40663.1| 724|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL355297-2|CAH71534.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL162578-3|CAI40014.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL162578-2|CAI40012.1| 331|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL162578-1|CAI40011.1| 724|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL049820-4|CAI42308.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL049820-3|CAI42306.1| 331|Homo sapiens RP11-419L10.1 protein. 31 5.4
AL049820-1|CAI42304.1| 724|Homo sapiens RP11-419L10.1 protein. 31 5.4
AK074180-1|BAB85006.1| 349|Homo sapiens FLJ00253 protein protein. 31 5.4
AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin remod... 31 5.4
AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein. 31 5.4
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein. 30 7.2
DQ304976-11|ABB98592.1| 603|Homo sapiens NADH dehydrogenase sub... 30 7.2
DQ304974-11|ABB98566.1| 603|Homo sapiens NADH dehydrogenase sub... 30 7.2
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase... 30 7.2
AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens ... 30 7.2
AK055432-1|BAB70921.1| 295|Homo sapiens protein ( Homo sapiens ... 30 7.2
BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein pr... 30 9.5
BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1, ... 30 9.5
AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A va... 30 9.5
AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens ... 30 9.5
AF468300-1|AAL76077.1| 1740|Homo sapiens BRG1-binding protein EL... 30 9.5
>BC100934-1|AAI00935.1| 288|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 288
Score = 250 bits (613), Expect = 3e-66
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRA 187
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG G
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGG-- 232
Query: 186 LKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 16
++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E + +L
Sbjct: 233 IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>BC100933-1|AAI00934.1| 288|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 288
Score = 250 bits (613), Expect = 3e-66
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRA 187
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG G
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGG-- 232
Query: 186 LKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 16
++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E + +L
Sbjct: 233 IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>BC100931-1|AAI00932.1| 288|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 288
Score = 250 bits (613), Expect = 3e-66
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRA 187
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG G
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGG-- 232
Query: 186 LKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 16
++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E + +L
Sbjct: 233 IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>AL365181-7|CAI13051.1| 288|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 288
Score = 250 bits (613), Expect = 3e-66
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRA 187
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG G
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGG-- 232
Query: 186 LKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 16
++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E + +L
Sbjct: 233 IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>AJ315849-1|CAC86580.1| 288|Homo sapiens apoA-I binding protein
protein.
Length = 288
Score = 250 bits (613), Expect = 3e-66
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRA 187
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG G
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGG-- 232
Query: 186 LKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 16
++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E + +L
Sbjct: 233 IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
>AL365181-5|CAI13049.1| 245|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 245
Score = 190 bits (463), Expect = 4e-48
Identities = 91/179 (50%), Positives = 128/179 (71%), Gaps = 5/179 (2%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP-DTK 367
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P +
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPM 174
Query: 366 DLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGR 190
++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSG ++K G GR
Sbjct: 175 TIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGAGIQK-VGWGR 232
>BC100932-1|AAI00933.1| 185|Homo sapiens APOA1BP protein protein.
Length = 185
Score = 187 bits (455), Expect = 4e-47
Identities = 88/182 (48%), Positives = 122/182 (67%), Gaps = 1/182 (0%)
Frame = -2
Query: 558 SALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKL 379
+ L++CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++
Sbjct: 7 TVLVICGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEM 66
Query: 378 P-DTKDLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGP 202
P + ++ Y+++VDA+FGFSFK VRE L L +P+ S+DIPSGWDVEKG
Sbjct: 67 PAEPMTIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGN 126
Query: 201 GEGRALKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIV 22
G ++P LLISL+APK A HYLGGRF+P + KKY L +P YPD E +
Sbjct: 127 AGG--IQPDLLISLTAPKKSATQ--FTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVY 182
Query: 21 KL 16
+L
Sbjct: 183 RL 184
>BC056917-1|AAH56917.1| 260|Homo sapiens APOA1BP protein protein.
Length = 260
Score = 146 bits (355), Expect = 5e-35
Identities = 65/116 (56%), Positives = 90/116 (77%), Gaps = 4/116 (3%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP 376
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMP 170
>AL365181-6|CAI13050.1| 260|Homo sapiens apolipoprotein A-I binding
protein protein.
Length = 260
Score = 146 bits (355), Expect = 5e-35
Identities = 65/116 (56%), Positives = 90/116 (77%), Gaps = 4/116 (3%)
Frame = -2
Query: 711 TXTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIV 544
T +YL+Q EA A+DQ+LF EY+FSVDQLMELAGLS A+AIAK +PP++ S + L++
Sbjct: 55 TVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVI 114
Query: 543 CGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP 376
CGPGNNGGDGLV ARH++LFGY +++YPKR KPL+ L+ QC + ++ + ++P
Sbjct: 115 CGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMP 170
>BC020948-1|AAH20948.1| 254|Homo sapiens FLJ44968 protein protein.
Length = 254
Score = 97.5 bits (232), Expect = 4e-20
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Frame = -2
Query: 687 SEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS----SALIVCGPGNNGG 520
+EAAAL+++L +Y+F QL+EL G + A A+ K FP S + L+VCGP NG
Sbjct: 79 AEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTVLVVCGPEQNGA 138
Query: 519 DGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNE-YKV 343
GLV ARH+++F Y ++ YP R+ L+ +L QC + ++ + LP L NE Y +
Sbjct: 139 VGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPTEVQLINEAYGL 198
Query: 342 LVDALFG 322
+VDA+ G
Sbjct: 199 VVDAVLG 205
>BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASNTL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 31.5 bits (68), Expect = 3.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 31.5 bits (68), Expect = 3.1
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 414 CIRFNVNII-DKLPDTKDLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSV 238
C+R+ +I + + K+++ YK +V L+GF +K P +++ + +V
Sbjct: 275 CLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPA---------VVVEKD----AV 321
Query: 237 DIPSGWDVEKGPG 199
IP+GWD +K G
Sbjct: 322 FIPAGWDNDKKIG 334
>CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein.
Length = 534
Score = 31.1 bits (67), Expect = 4.1
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Frame = -2
Query: 528 NGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEY 349
+G AA H Q V++ K K L + + + RF + + LP T N Y
Sbjct: 52 DGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRVLPSTSRRLNHY 111
Query: 348 KVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPAL 172
VL A+ G F+ R+ L P L+ +D+ D++ P G+A L
Sbjct: 112 -VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPL 159
Query: 171 LISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
L + A F+ N+K Y + + D+++K + +
Sbjct: 160 LPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>BC032112-1|AAH32112.1| 552|Homo sapiens integrin alpha FG-GAP
repeat containing 3 protein.
Length = 552
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -2
Query: 627 LMELAGLS--VASAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 505
L+ELA +S + + A +F PS H++ +++ GP ++ GLV+
Sbjct: 468 LLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVS 510
>BC013047-1|AAH13047.1| 552|Homo sapiens integrin alpha FG-GAP
repeat containing 3 protein.
Length = 552
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -2
Query: 627 LMELAGLS--VASAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 505
L+ELA +S + + A +F PS H++ +++ GP ++ GLV+
Sbjct: 468 LLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVS 510
>BC010521-1|AAH10521.1| 526|Homo sapiens ITFG3 protein protein.
Length = 526
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -2
Query: 627 LMELAGLS--VASAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 505
L+ELA +S + + A +F PS H++ +++ GP ++ GLV+
Sbjct: 442 LLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVS 484
>AK057165-1|BAB71374.1| 540|Homo sapiens protein ( Homo sapiens
cDNA FLJ32603 fis, clone STOMA1000117. ).
Length = 540
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -2
Query: 627 LMELAGLS--VASAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 505
L+ELA +S + + A +F PS H++ +++ GP ++ GLV+
Sbjct: 468 LLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVS 510
>AE006462-12|AAK61220.1| 636|Homo sapiens unknown function protein.
Length = 636
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -2
Query: 627 LMELAGLS--VASAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 505
L+ELA +S + + A +F PS H++ +++ GP ++ GLV+
Sbjct: 525 LLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVS 567
>D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58
protein.
Length = 534
Score = 30.7 bits (66), Expect = 5.4
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Frame = -2
Query: 540 GPGNNG-GDGLVAA---RHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPD 373
G G+ G DG AA H Q V++ K K L + + + RF + + LP
Sbjct: 44 GGGSTGEADGKTAAAAVEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPS 103
Query: 372 TKDLNNEYKVLVDALFG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGE 196
T N Y VL A+ G F+ R+ L P L+ +D+ D++ P
Sbjct: 104 TSRRLNHY-VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRT 151
Query: 195 GRALKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
G+A LL + A F+ N+K Y + + D+++K + +
Sbjct: 152 GKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 198
>AL591545-3|CAI40666.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 187 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 243
>AL591545-1|CAI40663.1| 724|Homo sapiens RP11-419L10.1 protein.
Length = 724
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 105 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 161
>AL355297-2|CAH71534.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 187 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 243
>AL162578-3|CAI40014.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 187 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 243
>AL162578-2|CAI40012.1| 331|Homo sapiens RP11-419L10.1 protein.
Length = 331
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 52 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 108
>AL162578-1|CAI40011.1| 724|Homo sapiens RP11-419L10.1 protein.
Length = 724
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 105 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 161
>AL049820-4|CAI42308.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 187 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 243
>AL049820-3|CAI42306.1| 331|Homo sapiens RP11-419L10.1 protein.
Length = 331
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 52 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 108
>AL049820-1|CAI42304.1| 724|Homo sapiens RP11-419L10.1 protein.
Length = 724
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 105 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 161
>AK074180-1|BAB85006.1| 349|Homo sapiens FLJ00253 protein protein.
Length = 349
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 66 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 122
>AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin
remodeling complex subunit OSA2 protein.
Length = 2165
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 612 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 668
>AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.
Length = 1957
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ ++ A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 404 LSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 460
>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
Length = 1203
Score = 30.3 bits (65), Expect = 7.2
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 131 SGLAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESI 268
SGL H+ ES I S+ F +PGP Q LGI+ + T +L SI
Sbjct: 433 SGLNHNPACESVIDSSAFGEGKAPGP-PFPQTLGIANVAT-RLSSI 476
>DQ304976-11|ABB98592.1| 603|Homo sapiens NADH dehydrogenase
subunit 5 protein.
Length = 603
Score = 30.3 bits (65), Expect = 7.2
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -2
Query: 477 NVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEYKVLVD-ALFGFS----F 313
N+S +P +T PLY L + F + ++ L D L N+ K+ F FS F
Sbjct: 471 NISPAFPFQTTIPLYLKLTALAVTF-LGLLTAL-DLNYLTNKLKMKSPLCTFYFSNMLGF 528
Query: 312 KPPVREELKPALDALIDSNLPVCSVDI 232
P + P L L NLP+ +D+
Sbjct: 529 YPSITHRTIPYLGLLTSQNLPLLLLDL 555
>DQ304974-11|ABB98566.1| 603|Homo sapiens NADH dehydrogenase
subunit 5 protein.
Length = 603
Score = 30.3 bits (65), Expect = 7.2
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -2
Query: 477 NVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEYKVLVD-ALFGFS----F 313
N+S +P +T PLY L + F + ++ L D L N+ K+ F FS F
Sbjct: 471 NISPAFPFQTTIPLYLKLTALAVTF-LGLLTAL-DLNYLTNKLKMKSPLCTFYFSNMLGF 528
Query: 312 KPPVREELKPALDALIDSNLPVCSVDI 232
P + P L L NLP+ +D+
Sbjct: 529 YPSITHRTIPYLGLLTSQNLPLLLLDL 555
>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine
ligase-like family, member 4 protein.
Length = 1199
Score = 30.3 bits (65), Expect = 7.2
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 131 SGLAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESI 268
SGL H+ ES I S+ F +PGP Q LGI+ + T +L SI
Sbjct: 429 SGLNHNPACESVIDSSAFGEGKAPGP-PFPQTLGIANVAT-RLSSI 472
>AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens
cDNA FLJ31237 fis, clone KIDNE2004846, highly similar to
26S PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 517
Score = 30.3 bits (65), Expect = 7.2
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Frame = -2
Query: 507 AARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEYKVLVDAL 328
AA H Q V++ K K L + + + RF + + LP T N Y VL A+
Sbjct: 42 AAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHY-VLYKAV 100
Query: 327 FG-FSFKPPVREELKPALDALIDSNLPVCSVDIPSGWDVEKGPGEGRALKPALLISLSAP 151
G F+ R+ L P L+ +D+ D++ P G+A LL + A
Sbjct: 101 QGFFTSNNATRDFLLPFLEEPMDTEA-----------DLQFRPRTGKAASTPLLPEVEAY 149
Query: 150 KLCAKPEFLRNTKHYLGGRFLPTDILKKYNLE 55
F+ N+K Y + + D+++K + +
Sbjct: 150 LQLLVVIFMMNSKRYKEAQKISDDLMQKISTQ 181
>AK055432-1|BAB70921.1| 295|Homo sapiens protein ( Homo sapiens
cDNA FLJ30870 fis, clone FEBRA2004237. ).
Length = 295
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 234 IPSGWDVEKGPGEGRALKPALLISLSAP--KLCAKPEFLRNTKHYLGG 97
+PS W+ E G GR P+ AP LC +P+ LR + GG
Sbjct: 1 MPSTWEAEAGGSAGRRAPPSSFRPGDAPVVPLCRQPDVLRRYFNRGGG 48
>BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein
protein.
Length = 335
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 414 CIRFNVNII-DKLPDTKDLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSV 238
C+++ +I + + K+++ YK +V L+GF +K P +++ + +V
Sbjct: 249 CLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPA---------VVVEKD----AV 295
Query: 237 DIPSGWDVEKGPG 199
IP+GWD +K G
Sbjct: 296 FIPAGWDNDKKIG 308
>BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1,
light intermediate chain 1 protein.
Length = 523
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 414 CIRFNVNII-DKLPDTKDLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSV 238
C+++ +I + + K+++ YK +V L+GF +K P +++ + +V
Sbjct: 275 CLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPA---------VVVEKD----AV 321
Query: 237 DIPSGWDVEKGPG 199
IP+GWD +K G
Sbjct: 322 FIPAGWDNDKKIG 334
>AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 414 CIRFNVNII-DKLPDTKDLNNEYKVLVDALFGFSFKPPVREELKPALDALIDSNLPVCSV 238
C+++ +I + + K+++ YK +V L+GF +K P +++ + +V
Sbjct: 275 CLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPA---------VVVEKD----AV 321
Query: 237 DIPSGWDVEKGPG 199
IP+GWD +K G
Sbjct: 322 FIPAGWDNDKKIG 334
>AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens
cDNA FLJ36887 fis, clone BNGH42005504, highly similar to
26S PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 521
Score = 29.9 bits (64), Expect = 9.5
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 5/183 (2%)
Frame = -2
Query: 588 AKVFPPSTHSSALIVCGPGNNG-GDG---LVAARHMQLFGYNVSVHYPKRTPKPLYENLL 421
AK P G G+ G DG AA H Q V++ K K L + +
Sbjct: 15 AKPPPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVS 74
Query: 420 EQCIRFNVNIIDKLPDTKDLNNEYKVLVDALFG-FSFKPPVREELKPALDALIDSNLPVC 244
+ RF + + LP T N Y VL A+ G F+ R+ L P L+ +D+
Sbjct: 75 GKEPRFVLRALRMLPSTSRRLNHY-VLYKAVQGFFTSNNATRDFLLPFLEEPMDTEA--- 130
Query: 243 SVDIPSGWDVEKGPGEGRALKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDILKKY 64
D++ P G A LL + A F+ N+K Y + + D+++K
Sbjct: 131 --------DLQFRPRTGIAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKI 182
Query: 63 NLE 55
+ +
Sbjct: 183 STQ 185
>AF468300-1|AAL76077.1| 1740|Homo sapiens BRG1-binding protein
ELD/OSA1 protein.
Length = 1740
Score = 29.9 bits (64), Expect = 9.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 137 LAHSLGAESDISSAGFNALPSPGPFSTSQPLGISTLHTGKLESISASNAGFNSSRTG 307
L+ + A SS G + P+ PFS +S++ G S S G N SR+G
Sbjct: 187 LSSAASASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 243
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,498,956
Number of Sequences: 237096
Number of extensions: 2364582
Number of successful extensions: 5277
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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