Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k23
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 33 0.049
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 29 0.45
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.60
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 1.4
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 27 3.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 5.6
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 5.6
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 25 7.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.7
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 9.7
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 32.7 bits (71), Expect = 0.049
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 444 TESFFDMFSQSSNHSLISFKNKADSQKHIVRIPLSDNTCLTTNRKVNSVQRKNKLNLNLI 265
TE + SQ N+ ++ K+K S K + N+C N ++N + NK+N I
Sbjct: 257 TEDVMNKSSQKENNDILR-KHKT-SVKFPTNLDAL-NSCTMENHEINELTATNKMNDGPI 313
Query: 264 TKCNEFKMN-KNTSVRQLK 211
TKC +N KN L+
Sbjct: 314 TKCARETINIKNLKTSNLE 332
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 29.5 bits (63), Expect = 0.45
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 155 SNSIIAFSVNNSLCPLLSLFNCLTEVFLFILNS 253
SNS+ A V+ ++ P +S C++ ++F++NS
Sbjct: 403 SNSLAAIGVSQTVFPFISSSLCISPRYMFVVNS 435
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.1 bits (62), Expect = 0.60
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 561 SNNKNDKGIIVDVKEYCTT--SRLTDAPSIFRIATDHGTNITESFFDMFSQSSNHSLISF 388
+N+ N +I +++Y SRL +PS + D+ + S + + + N F
Sbjct: 218 NNSGNSPSLINHLRQYLNQDFSRLHQSPSPIPNSNDNDSQTRRSSWSSIASAFNDFPEEF 277
Query: 387 KNKADSQKHIVRIPLSDNTCLTTN 316
N ++ + H PL+ N T N
Sbjct: 278 PNASNPEAHSNFTPLNGNDESTVN 301
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 203 LSLFNCLTEVFLFILNSLHLVIKFKFNLFL 292
LSLF CL F F+L L F F FL
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 221 LTEVFLFILNSLHLVIKFKFNLFLR-CTEFTFLFVVKHVLS 340
L+++F+ +S ++ F F FL C +FLF + H+LS
Sbjct: 139 LSQIFIVYFSSFP-ILHFLFFFFLCVCVFLSFLFSLSHLLS 178
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 564 KSNNKNDKGIIVDVKEYCTTSRLTDAPSIFRIATDHGTNITESFFDMFSQSSNHSLISFK 385
K NNKND+ + K + +T AP I I+T + +S D S +S S + K
Sbjct: 486 KLNNKNDESSLSPAKSHAV---ITQAPKIPLISTFTRLSTRKSSNDFNSSNSRPSSNALK 542
Query: 384 NKAD 373
+ A+
Sbjct: 543 SDAN 546
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 161 SIIAFSVNNSLCPLLSLFNCLTEVFLFILNSLHLVIKFKFNLFLRCTEFTFL 316
SII F +N L F L +FL I N + IKF + F+ F F+
Sbjct: 92 SIIKFLLNRRKVSFLLSFLLLFSLFLLIPNDGRVNIKFFYKDFVDRIPFRFI 143
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -1
Query: 186 LLTENAMMEFDPMIKMKRDILVTFYSILAITVFAALSLPEVLNV**LAMMRAFRMYLFY 10
L+ + + F P+I ++ ++V Y A T+FAA+ + + N+ ++ + ++LFY
Sbjct: 161 LMIASIVCAFVPLIFIRIPVIVAMY---AWTLFAAMGVLQNSNLSNKKLLAVYPLFLFY 216
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.2
Identities = 30/160 (18%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Frame = -1
Query: 630 YLNTGKSDRDTDDQGVMGGVVPKSNNKNDKGIIVDVKEYCTTSRLTDAPSIFRIATDHGT 451
+ N D + +Q + + SN +K ++D K+ + +++ +
Sbjct: 452 FQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQS 511
Query: 450 NITESFFDMFSQSSNHSLISFKNKADSQKHIVRIPLSDNTCLTTN------RKVNSVQRK 289
++ D+ ++ H + ++++ + K ++ +S++ L++ K +V
Sbjct: 512 SLQSLQRDILNEKKKHEV--YESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVATN 569
Query: 288 NKLNLN---LITKCNEFKMNKNTSVRQLKSESKGHSELLT 178
N+L+ + L T CN F+ SV QLK + S L T
Sbjct: 570 NELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDT 609
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 244 FKFITFSNQIQIQFIFTLYRIYFSVCC*TRIIR 342
+K +T+S IQ F L+ + S+C ++R
Sbjct: 51 YKIVTYSLTIQFNFKSLLFLFFVSICVVILVVR 83
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 381 KADSQ-KHIVRIPLSDNTCLTTNRKVNSVQRK 289
K +SQ +H +R P+S TTN+ N Q+K
Sbjct: 1099 KMESQIEHAIRTPVSSFAKQTTNKHANLKQKK 1130
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 241 HFKFITFSNQIQIQFIFTLYRIYFSVCC*T-RIIR 342
HF+F + +I FIF L + +CC T R IR
Sbjct: 52 HFRFYGLNTLGKIIFIFQLSILTLYICCITFRFIR 86
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -1
Query: 462 DHGTNITESFFDMFSQSSNHSLISFKNKADSQKHIVRIPLSDNTCLTTN 316
D G N+++SF + + I K++ D + IP + N N
Sbjct: 860 DDGANLSDSFLTEVYEEIQKNEIVLKDEQDPTSNFPEIPGTSNLSFAAN 908
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 243 MNKNTSVRQLKSESKGHSELLTENAMMEFDPMIKMKRDI 127
++K SVR+LKS S+ + T +E D + DI
Sbjct: 197 LSKQKSVRELKSPSRPSALAETNVEELELDSLFHASNDI 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,786
Number of Sequences: 5004
Number of extensions: 50340
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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